RNA id: AMCG00016106


Basic Information

Item Value
RNA id AMCG00016106
length 6310
RNA type mRNA
GC content 0.43
exon number 36
gene id AMCG00016106
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7473851 ~ 7508095 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCTGATAACTGCTCCAAACATTATTAATCTGGGAGAAGAGGAGACGGTGGCAGTGCAGCTTCATGATGCCACAGGTGTCATTAAAATGAGGCTTTACTTTGAAGACCAGAGGGAGTATCCTTATAAGCGATTGTCAGATGAAATTGAAATTTCACTCAATGGGGGAAATCAATACCAGGCAGTGGATCCTACAAAGTATGTACtatcaaaacaacaaagaagCAAGAACTTACCAAATCCCTATGTAACACTTGTTGCGAtcaacaatgtttttaaaaatccaatGAAAGAACTCATCACTCTTTCCACAAGGAagggttatatttttattcagacCGATAAACCAATCTATACTCCAAGTGAAATAGGTTTGCGGATCTACTATGCAGTTAAGAGAACCCATCAGATTCTGAAACAACACATAACGATCCCTGACGTTGAACAGGCTGGCAACTGGAAGATTGTTGCTTCATTCCACGACTTTCCAATGTCGAATTCCACAGCTGAATTCCAAGTCAAGGAATATGtCCTCCCGTCGTTTGAAGTGAAAATACAGGCTTTCAAGCCATACTACATGCTGAAGGAGAAGTCTTTTCCTTTTAACATCTCTGCAAGgtaTACCTATGGGAAAGGTATCAGCGGTATTGCGTATGTAAGATTTGGTGTAATTGATGAAGTAGGAAATAGGATATTCCTacctgacattgaaatacagaCTTCAGCTACCACAACATATCCTGATGGTACTGCTGCCCCAAACGTGAAGATGAAAGCTGAAGTCCATGTGGCAGGAGGCCATGGAGGAAGCATCAATTTGGAAGGCACTGGAAACCAGGATGGAGAAACGGTTTTAACCTTCAAAGTGCCTAAAATGGCACTGGGTCTTCACATTACGGTTATTGCTGAAGGGAGCTCTTCCGACATCACCAGCAAGGTCATTACAGCTACACCTTTCCACTCCAAGTCCAAGAGTTATCTGAGCATTGAGGTGCCCCACACCATCTTGGGTCCAGGAGAGGCTATGGATGTTACCTTCAAAGACATTACCCCTGGCATTGACAAACCAACGTACATTTACTATGTGATGGTGAGCAAAGGAAAGGTGATTCGAGCAAACCGAGTCCAACGCACAGACACCACCAAAGTCAGGCTGCCCTTCCACTTCGACATGGTCCCTGCCTTCCGCTTGATTGCTTATTTCTACACCAAATTGCAGGAAGTGGTGGCTGACTCTGTCTGGGTAGATGTCAGAGATGTCTGCAAAGGACAGATAAAAGTGACACCATCCAAGGAGGAATACAGACCAGCAGAGACAATGGAATTTCTCATTGAGACAGACCAGGCAGGGAAGGTGGCCCTGGCCGCTGTGGACACTGCAGTTTATATCCtcaacaagcaaaacaaactcacGCCTAAGAAGATGTTTGATTACATGAACTCCTATGACCTTGCCTGTTCCCCAGGAGGAGGTCATAACACTGAACAAGTATTTTATGATGCCGGCCTGACTTTTCTTTCTAGTTTTGGATTTGAAGCAAACAGGAGGTTAgAATACAACTGTAAGCGTAGGAAACAGAGGCAGAAACGAGCCTACACTTATTACGCTGAATTCTCTAAGATAGtaaacaaacaaagcaaccCTGTGCTGAAGAAATGCTGCAATGATGGAGCAAAGCTGAGCCCAATGAGGTTCTCCTGTGAGAAGAGAGTCACAAAGGCAAAGCACAGCTCTCCAGACTGCCAGCAAGTGTTCCTGGAGTGCTGCAAGCAGGCCACCACCCTGAGGGAAAAGATCCAGAAAAGCAAGAGGAGACTGAATCTAGCAAGAACTGATgtcattgaaaatgaaaatgccatTGATGAAAACGATATCCGCCTTCGGAGTTTCTTTCCCCAGACTTGGCTTTGGGATGTTCTTGACGTGCCAGAGTCTGGATTTTGTATAGTGGAGCCCACGAAATTCAGAGTTTTCCAGGATTTTTTTGTCTCTCTAAAATTGCCTTATTCAGTGAAAAGGCACGAACAACTAGAGGTGAAAGCTGTGGTGTATAACTACAGGCCGGAATCACTAGagGTGACGGTGATGTTGAAAACCACGCAAGAGCTTTGCAGTCCAGATAATATGGATGGGAAGCAGAAGGTCACTGTTCCTGGCAATTCAGCTGTGCCTGTTTATTTTTCGGTGGTGCCCCTGGACATCGGAGAAATTCCCCTCCACGTGACAGCACATGCCTCCAGCAAAATATCAGATGCAGTCCAGAAAAACCTTAAAGTTGtgGCAGAAGGTGTGCTCATGTCCACTCATTATGAATACAATCTCGATGGAGCAGGAGCTAAAACACGTACGATTGAAATTCCTGACATGGACAATACTATTCCAGGAGTAGAGTCAGAAGCATATGCCAGCATCAAAGGGGGGGCTATGGGGGAGTCGGCACAAAATTGCCTCAACCTGGAAGGGGTTGAAAAGCTTATTAGACTCCCAACAGGCTGCGCTGAGCAAACCATGGTAAAAATGTCCCCAGCGATACATGCCATGAGGTACCTGGATGCCAGTGAGCAATGGATTTACCTCAAAGCTGATAGCAAAGATAAGGCAATTGAAATGATCCAAAGTGGCTATACCACAATCCTAACCTTCAAGAAGGATGATGGATCATATGGGGCCTTTTTAACCAGACCCAGCAGCATATGGCTGACGGCATTCATTGCGAAAGAGCTCACCAGATGCAAAGCGTACATAGAGGTTGAAGATGCATATATTCGAGAGTCTATTTCCTATCTGGTGTCCAAACAGCTTGCCAGTGGAGCCTTCAATGATCCTAATCCTCTTTATGACCGAACCATGCAGgggGGAGTTGGGGGAGCAGAAGTTGATGCTTCTTTGACCTCTTTTGTGATCGTTGCAATGCATCACGCTTTGGAGGCGTATCCAAGAAATGAAACCTCAGAAGTGAGCGCTTCTATACATAAGGCTGTTACCTATTTGAGTCAGCGGCTGGACTCTCTCCAGAGGCCTTTTGCTGTCGCAATTACAGCATATGCTCTGACCCTGGTCAGACCCAGGAGTGACATTGCCACCCAAGCACAGTCAAAGCTCAGAGGTTTAGCAACTTGCGATGACGGAAACAAACAATGCTACTGGAAAGCAGATGAAAGTTTAAGACTGGTAGGAGAAACCAGGAAACGAAAGGTTCCTGAAGCATCTTCAATATCTGTGGAGGCTACAGCGTACGCCCTGCTACAGACGTTACTGGTTAACGACAAAGAATATGCAACTTCCATTGCTAGATGGCTAACAGAACAACGGAAATACGGAGGTGGATTCCGTTCAACACAGGACACGGTTGTGGCTTTAGAGGCCTTGTCCCAATACAGTATACAGCTGTTTGACGTGGAAGACCTCAATCTCACTGTGGAACTGTGTAATCCGAGAGGCAAAAAGGAGACGGTGAATCTCAGCAAAATGACCGCCTTGACTGTGTCAGCGTTCCAGGTTCGACCAGGTGAACAGATGGTCGTCAATATTGAAGGGAAGGGCAAAGGAACACTAACAATTGTACAGACGTACCGGACTATGAAAGTGACAGACTCCGTATGTGATTATTATAAATTAGAAGTGAGCTTACAAGGAGAActtgaatacaaatCGAGTTTTGACTATGAGGATGACCTGGGAGACTATTATAACTACGATTACGAGAGTCCTTCAGCAGACGAGCCCATGAGCAGGATTGAGTGGTTTGATCTGCGGACGAGGAGAAAGAGACAGGCAGTTGGCTCCAGTGAAAAGGAGAGTTCTCTCCTGTATACCGTGTGTGTGAGCACGAATGGGCTGAATGCTACTGGAATGGCCATAGTTGATATTTCACTTCTGAGTGGATTGGAGCCAAACATACAGGATCTTGAGGAGAGGGTGAAGTCCACAGACAAGTACATTGACCGTTACGATTTGGGAGCAGGGAaactgtttctgtatttttacgAGATCACAAATATCAATGAATGTGTGTCATTCGGGGCAAAACAGATTGCTCCAATTGGCATGGTACAGCCTGCTAATGCTGTCATCTATGATTACTATAACCCAGaGAGGAGATGCAACATTTTTTACAGCGCACCCAAGCAAAGTAATATGGTCTCAAAACTGTGCAGTGAAgacgtgtgtgtctgtgctgaagGTCGCTgccccaaaataaaatcaacgTTTAGTAAGATGATGACCGACAACACCCGCTTCAGTTTTGCCTGCTTCTCTCCTATTGTGGATTATGCGTACGTTATCAAGGTGCTCAACACAACTCAAGATGGAGTCTTTGATTACTATGCTGTGGACGTTACCCAAACACTGCACATTAgTAAGGATGAAGCACTCCTAACAGGGAACACTTTCCGCTCCCTAATAAAACGACAGTCCTGTGAGTTTTCAATGAAACCGGATAAGAAGTATCTAGTGATGGGAAAAGACTTCAGTAGTACAGATACTACCGATTCTAAAGGAAACATACAGTACTTCCTCAATCACGAGGTGTGGGTCGAGCAGATTCCTGAAGAGACAAAATGCCGGGCAACGCGAAGCCGGAAAGCATGCAAACTGCTCCACGACTTCATGCAGAATTACGGACTGGAGCAATGTGCTTTAAAGTAAAAGGGCGATAACAAGCAAaactttaaatcaatacatgttttttccagATGTATAGAATTAGGAGTTGGCTAACATAAAAAGGAACTTTAGGTCTTAAGCCAGTGCCATTTAATTTATGGAGTGTGGCTTCAGTTACACTGGACTGTTGGAGTGAATTAAAAGATATTTGCTGGCTAAAGGAAAAAAGTACatgtataaaatcaatattgACTACTGAATTAGCAtggagaaaactgtaaagactTCAATTGATTGAATTAAAGTTATGACGGGAGAACATTTCACTGCTACTCCATCAGTAATTCTGTGATCTTCAATTCTTCATTTAAACAAGCAGGTTTCTCTCTCAATTATTCTGAAATTCAAGTGTCCCAAGGTTGCTATGGCGATATAACCGCAATATTTTGGTTAATATAAGCCTTTATGCGGCGACTGCAAGCTAAAATGCCCAATCTGTAACACAGCAGGATTGTGGCTTTGGTTAACAGTGCATTAAAATTAAGCACCTTATTCAGAAAGAATATAGTGTATTGAGATTCCTTAAGACTGGATCCCAGCTTTTGGGGAAAGGTATAGTGGTGAAGTAATATGTTATGGCTGGTGGGTTTTCTGGATCTCAGTTGCAGTGCAGTCCAGATGAAGAAATGAGACACGGgctgagattaaataaaaacttggaCCCACCCACTagtagaaaactacaaacctgcaTTTGTGGAGTACTGTTGTTCAGATTGCTATTAGCAGATGGGTCAAAGTATTGATCCAGCCCATGGTTTAAAAGGCCTTGCTGATACCAAATGAAAGTGTGTCCAAAAACAAACGGGAGAACAGTACACATTGCACCCATGTTTAATAGATAAACCCATTTAATCTCatttcatttgtgtttaaaacatttttttttttttttttttccccataacatcatttttttttagtaaaagGAGTAAATTATTCAGTGTTACAGCGACATTAGGCTACTAAAACAACAGACCAGTACTGGTCTCTATAGCTATACCATCTGGATTCTACAGCTACTCTATGGCTGTGGGTGAGATACATACAAACCCTAGTGTACTGTATACATTCATTCAGTCATTGGAGGAACTGGCATCGAGGGTGACCATATGACTTCACGATGAAAAAGggaaagtatttttgttttgttttgttttgttttatttatttgtcttacCAGGATGCAAAATGTTTCTTATCccttcaaagcataatgcaactAGAGGCCTTTTAGCATGTTTAGCCAAGGTATTCTGGAATGtgaatttgaaaacaatcttctgaaaataaaatcaaaaatcaaaattgCAAAATCACTCTTTCCTCAAAGTGAAAGTACATGCTGGCTCAAACAAACTCTTTAgaagtttacatttttgcagtATTTCGAGAACAGATGCCTCCTCTAAAAACTATGTGGGGGCATGAGTGCAAATTCAACTAAAGTGCCGAACACTGTATGAAGATCCTATAACCCTGCACAGATAATTCTAGTTACAGAGTAATCAGTTCATGAAATACTTTTAAGGAAACCTAAATGTCTGCCCACTATCTTAGCTTTTTACTTATTGCTACCTAGTTTAATAATGTACGCAGGGTCTCCAAACTAGCTTTCTCCTAACGGGTACACAGAGACCC

Function

GO: NA

KEGG:

id description
K03989 C4; complement component 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13572 lncRNA downstream 1250622 6222863 ~ 6223229 (-) True G10956
TU13568 lncRNA downstream 1583935 5889588 ~ 5889916 (-) True G10952
TU13556 lncRNA downstream 1632147 5841477 ~ 5841704 (-) True G10940
TU13551 lncRNA downstream 1722517 5750918 ~ 5751334 (-) True G10935
TU13550 lncRNA downstream 1727284 5746336 ~ 5746567 (-) True G10934
TU13884 lncRNA upstream 111603 7619698 ~ 7619997 (-) True G11215
TU13885 lncRNA upstream 112545 7620640 ~ 7620853 (-) True G11216
TU13891 lncRNA upstream 172816 7680911 ~ 7688962 (-) True AMCG00016110
TU13918 lncRNA upstream 364322 7872417 ~ 7872769 (-) True G11243
TU13922 lncRNA upstream 458976 7967071 ~ 7967305 (-) True G11247
AMCG00016097 mRNA downstream 376324 7061817 ~ 7097527 (-) True AMCG00016097
AMCG00016096 mRNA downstream 417076 7053706 ~ 7056775 (-) True AMCG00016096
AMCG00016095 mRNA downstream 427857 7025102 ~ 7045994 (-) True AMCG00016095
AMCG00016093 mRNA downstream 453423 7015962 ~ 7020428 (-) True AMCG00016093
AMCG00016094 mRNA downstream 483930 6960047 ~ 6989921 (-) True AMCG00016094
AMCG00016105 mRNA upstream 12071 7520166 ~ 7526254 (-) True AMCG00016105
AMCG00016108 mRNA upstream 21816 7529911 ~ 7574480 (-) True AMCG00016108
AMCG00016107 mRNA upstream 100412 7608507 ~ 7616298 (-) True AMCG00016107
AMCG00016110 mRNA upstream 172867 7680962 ~ 7753437 (-) False AMCG00016110
AMCG00016111 mRNA upstream 522830 8030925 ~ 8034752 (-) True AMCG00016111
TU13237 other downstream 3553427 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 3934658 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 4438668 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 4763166 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 683451 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 3338739 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 3338836 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 4815066 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 5354004 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile