RNA id: AMCG00016112



Basic Information


Item Value
RNA id AMCG00016112
length 614
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00016112
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8048792 ~ 8051720 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTCATTGTTACAGTCTGCAAATTATACTTCCAGAATATATCGATGACATCACAATAACGACTCGTATATATACGCCGACTTTACTTTCTTCCTCCTTCCGGTTTCTACATCCATGTATGTAGGAACTGATCCCGTCAGTGCCGACTTCAGTCACATCATGATGGACATCGTGAAGTTCGTGACTCCAGCGTATATCATGGCCCTCACTGAAAACCTGCCCCAGTGCTACACCATTGACTGTGTTGGTTCTAGGTGGTCTGAGGCGAAGcCCGATGCTGAACTCACAGCCAGCCATGAGCTTCGGGTCGAGATGAAGAAAATGCAGGATGAATTTCGGAAGAAGACTGAGGAGATGAATGCTGTGAAAGAAAGACTAGCGTCTGAGATGCGGAAGAGAGAGTGTGAAAACCAGGCACTGCTGAGTAAAATCAGTGCTCTTGAAGAGACGAATGACAAGTTCTTCAAAAAACTAGAAGAAGCCAAATCGAAGATCACAGCGCCTGTCCCAATGCCTCCGACCCCGCCCCCTCCTCCGCCTCCGCCACTGCCCCCGCCCCCGCCACCCGGAGCCCCTGGGATTCCCCTGCCCCCCGGAGCCCTTGGGATGCCCCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13923 lncRNA upstream 80894 7967594 ~ 7967898 (+) True G11248
TU13921 lncRNA upstream 81481 7966988 ~ 7967311 (+) True G11246
TU13895 lncRNA upstream 290067 7758475 ~ 7758725 (+) True G11226
TU13879 lncRNA upstream 427235 7620862 ~ 7621557 (+) True G11210
TU13871 lncRNA upstream 451467 7527047 ~ 7597325 (+) True G11202
TU13974 lncRNA downstream 42080 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA downstream 42080 8093800 ~ 8095164 (+) False G11287
TU14002 lncRNA downstream 86995 8138715 ~ 8139223 (+) True G11308
TU14063 lncRNA downstream 381868 8433588 ~ 8475800 (+) True G11363
TU14218 lncRNA downstream 1029226 9080946 ~ 9084621 (+) True AMCG00016136
AMCG00016117 mRNA upstream 3847 8034903 ~ 8044945 (+) True AMCG00016117
AMCG00016116 mRNA upstream 18574 8013819 ~ 8030218 (+) True AMCG00016116
AMCG00016115 mRNA upstream 177283 7847361 ~ 7871509 (+) True AMCG00016115
AMCG00016109 mRNA upstream 236613 7796925 ~ 7812179 (+) True AMCG00016109
AMCG00016101 mRNA upstream 573935 7446450 ~ 7474857 (+) True AMCG00016101
AMCG00016113 mRNA downstream 30425 8082145 ~ 8092799 (+) True AMCG00016113
AMCG00016114 mRNA downstream 61301 8113021 ~ 8117376 (+) True AMCG00016114
AMCG00016121 mRNA downstream 123254 8174974 ~ 8178038 (+) True AMCG00016121
AMCG00016120 mRNA downstream 126987 8178707 ~ 8194672 (+) True AMCG00016120
AMCG00016123 mRNA downstream 147154 8198874 ~ 8202539 (+) True AMCG00016123
TU13604 other upstream 1383244 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 1387124 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 3620733 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 5287073 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 1016561 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 1047700 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 1171692 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 1507744 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 1547095 9598815 ~ 9599156 (+) True G11660

Expression Profile