RNA id: AMCG00016114


Basic Information

Item Value
RNA id AMCG00016114
length 1399
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00016114
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8113021 ~ 8117376 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTTGTGCCTAACAACCAATGAACAACAGCGAAGGAGGAGTCTAGTGTTCCCTATATACAGGTTTGTGGCATGCAGTGCAATAGCAAACACAATGCTGGGCTCCCTGCTTCTCCTGTGGGCTGGGCTTCTCCTCCTCTATTTCCTATGGAAGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAACCATTTCCGATATTTGGGAATCTGCTGCAGCTAAACCTCAAGAATCCCATGAAAGACTTTGAAAAGCTGTCCAAGCGCTATGGAaaagtgtacagtgtgtatttCGGGGGCAAGCCGGTTGTGTTACTGCATGGTTTGCAGTCAGTGAAGGAAGCCCTGATGACTCGGGGAGTTGAATTTGGCGGGAGGCCCCAGGGCCTGCTGGTCAATGACATTAATGAGAATAAAGGTGTAATTATAGTCAACTACGGCCCCAGCTGGAAGGAGCAGCGGCGGTTTGCTATGAGCACCCTGAGGAACTTCGGGCTGGGAAAGCTGTCTATGGAGGAGAGGATTCTGGAGGAGACTTCACATCTCAACTCATACATAGATAAGAGTGCAGGTCAGTGCTTGGACCCTCAAACATTGTTCCATAATGCCTTATCCAATGTCATCTGTGCCATCATGTTTGGATCCCACTACAACTATGAGGACCAGTCCTTCCAGTCCCTGATACGAATgataactgaaaacacaaaaattatTAATGGACCTTGGGGCATGCTCTATGATACCATACCCTTAATTAGGAGCTTACCTCTGCCTTTCCAGAAAATCTTTGAAAACCGAGACAAGGTGAAAGCATTTTTCCAAGCCAAAGTGACTGAGCACAAGGAGACACGGGTCCCAGGAAAGCCACGAGACATGATTGACTGCTATCTCAATGAAATTGACAAGAGAGGTAATGATGGCTCCTCCTTTGATGATGGCTTCATGATGGTCTTCTTGATGGATCTCTTTGTTGCTGGAACAGACACCAGCTCTACTACTCTCCGCGTGGGCCTCTTGCAGCTCATGATGCATCCAGATGTGCAAGCGCGGTGCCAACAGGAGATCGACACTGTCCTTGGAGAGAGAAAGCAGGTCTGCTATGAGGATAGGCACAGGATGCCCTATGTCCAAGCTGTGATCCACGAAGTGCAGCGCTATGGAAGCGTCGTCCCTCTCAGTGTCTTCCACGCCACCACTCAGGATACACAGGTGCTGGGCTACAGCATTCCAAAGGCGCTGGCACGCATGGAGCTGTTCTTGTTCTTTGTGACGCTGCTGCGCCGCTTCCAGTTCCACTGGCCCCAGGATGGTGGGGAGCCCGACCTCACGCCTCACTTTGGAATCATCCAGGGACCCAGACCCTACCGACTGGGAGTGAGGCTCAGGGGGCGGCAGTCT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13974 lncRNA upstream 17817 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 17857 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 145123 7967594 ~ 7967898 (+) True G11248
TU13921 lncRNA upstream 145710 7966988 ~ 7967311 (+) True G11246
TU13895 lncRNA upstream 354296 7758475 ~ 7758725 (+) True G11226
TU14002 lncRNA downstream 21339 8138715 ~ 8139223 (+) True G11308
TU14063 lncRNA downstream 316212 8433588 ~ 8475800 (+) True G11363
TU14218 lncRNA downstream 963570 9080946 ~ 9084621 (+) True AMCG00016136
TU14239 lncRNA downstream 978417 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 979213 9096589 ~ 9096811 (+) True G11507
AMCG00016113 mRNA upstream 20222 8082145 ~ 8092799 (+) True AMCG00016113
AMCG00016112 mRNA upstream 61301 8048792 ~ 8051720 (+) True AMCG00016112
AMCG00016117 mRNA upstream 68076 8034903 ~ 8044945 (+) True AMCG00016117
AMCG00016116 mRNA upstream 82803 8013819 ~ 8030218 (+) True AMCG00016116
AMCG00016115 mRNA upstream 241512 7847361 ~ 7871509 (+) True AMCG00016115
AMCG00016121 mRNA downstream 57598 8174974 ~ 8178038 (+) True AMCG00016121
AMCG00016120 mRNA downstream 61331 8178707 ~ 8194672 (+) True AMCG00016120
AMCG00016123 mRNA downstream 81498 8198874 ~ 8202539 (+) True AMCG00016123
AMCG00016122 mRNA downstream 89463 8206839 ~ 8225134 (+) True AMCG00016122
AMCG00016126 mRNA downstream 109755 8227131 ~ 8234032 (+) True AMCG00016126
TU13604 other upstream 1447473 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 1451353 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 3684962 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 5351302 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 950905 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 982044 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 1106036 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 1442088 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 1481439 9598815 ~ 9599156 (+) True G11660

Expression Profile