RNA id: AMCG00016120


Basic Information

Item Value
RNA id AMCG00016120
length 3532
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00016120
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8178707 ~ 8194672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAATTAAGAGGTTAGGATAAGCAAGACATCACTGTAATCTCAGTTTAATGGTGAACCGTGTTTTATGTGGGATCAGCGCGACTGCCTGTAGAGACGAAGGGTATTTACAGTTTTGCGACAATGTGGAGGATCATGTGACGTTGTGTTTTCAGACCGGAGTTTGTTGTTTCTGTCAACAGGTATAAAGACACGAAGTGACTCCGGATCGATACATTGTGGATATACAGCGGGTCTACCCTTAAAAAgGTATGGAAAAAGCTAAACCGGAGGAGTGCAATGATGCCCGGCTGCAGATCATCAAAGAGGGCTACCAGAAGGCCTTTGAGTTCATCAACATGGGGCTGACGGAGGATGAGGCCGGGCACAAGGCGGAGGCCCTGGCGCTCTACAGACAGGGGCAGCAGCACCTGCTCATGGCGATCAGCATTCCCTCCCAGGGGCCCGAGTGCACGGGGCCCATGTGGGAGTCAGCCAAGCAGATGCAGCAGAAGATGCAGGAGACCCTGTCCAACATTACCACTCGCCTCCGCATACTGGAGCCTGGGGAGGCCACCCCAACCCCGGGCATCTCCATGGGGGTGGGACCGGCCGCCGGATACTGTGGACAACTGTACCCGCAACTGCCTTTGAAGGAAAAGACAGATAGACCACCTGCGCCAAAGGTCCTCTTCCCTGAGGGGCAGCCTCCCGGGGCTGTAGGTGGGGCTCCCTTTGGTGCCCAGGCAGCTTACCCCTCACTCTCCCCCACGCGCCAGGGAGTCCCCGGCGAGCTCCCCCCGGCCTACTCCCCGCAGGCTGCAGACGGCCACCTCAGCATTTCCTACGGGACGGATTCCGGCGAGCTGTCCCTGGTCGGGGACGATTTCTACAGCCAGACGCCCAGCCACCCACCGCCCCTGCAGAGCATGGGGGAGGATGGGGAGGAGCTGCTGTTTATCCAGCAGGGCGTGCAGATCTTCTTCGTTTCACCTGAGGGTCATGTGAGTGCCCCTTCCTACCCGGGGCACCTGCGCATTGTCAAGTTCACCAGCTCCCACCCGGATGTGGCCCCCAATCGGCCCCCGGCATTCCTACAGGTTTGCGACTGGCTGTACCCATTGATGTCTACAGAGTCCCCCGTCCTGCTGTGTAACACGGGGGTTTACATGTTCCCTGACATGATGGCACAGGTCCCGGGGTCCTACGTGGGGGTGGTGCTCTCCGCAGAACTGCCTATGTCGGAGAGAGAGCTCTTCCAGGACCTGATGTCTCAGCTGACTGACTTAAGAGTGCAGGCCCCTGAAGAAGCAGCTGAAACCATCAACCTGCCCCAGAAGGTTCCTATCATACCGCCTGAAGTGGATGTCGAGGAAATGGAGAAGGCCCTGCCGGACTGGAGTGAGAAGGTCGCTCATGGCATCCTCACAGGAGCGTCTTGGCTCAGCTGGGGTCTGGTTAAAGGGGCGGAGTACACGGGAAAAGCCATCCACAAAGGAGCCTCCAAACTGAGGGAACACATCAACCCTGAGGACAAGCCCGCCCAGGTCAGCCCCTCCGTGGCTAAGGGGCTGCACGTCGCAAAGCAAGCCACTGGGGGGGCGGTGAAAGTCAGCCAGTTTCTGGTGGACGGAGTGTGCGCCGTGGCCAGCTGTGTGGGGAAGGAGTTGGCTCCCCACGTGAAGAAGCATGGCAGCAAACTGATCCCCGAATCCCTGAAGAAAGACAAGGACGGCAGGTACGGTGCTGCCGCCGGCCAGGCCACAGATAACGCCATGAACTCGGCCATCAACGTGGGGGTCACGGCATTCAACATCGACAACCTAGGGATCAAGGCGGTGGTGAAGAAGACGGGCAAAGAAACGGCCCACGCGCTCCTGGACAATTACAAGATTCAggagaaggaagagaaaaaggAGGGGAAGTAACCCTGCTCTCAGTACCACTCTAGTGCCCTTTACTTCTAGCCTTAATATTATAAAAGCAGTTAAAGgcttatttaatttagattcaACAAGTGTGCACATGAGAAttctaatacatttgtttacactGCTACTTGAGGTCTGCTAGAAAGCACTTTAAAGTGACAAATACtgtatggaagaaaaaaaaaaagctcatttGGAAGGGTGGGGTGCAGTGTCATAGCCTTATTAGACTTGTATCCACATGCATCCCTATGAAGATGGGTTTTGAAGATTAATGATGCTCCTGTATGCAATATAtatgcagattttctttttaagtggGGCAAAATTCCAAATGGTAGGTGAAGAAAAGTTTCcttgtatttatattcttattaCCAAATGTATTGagacaaaagacaaatacacacagagcaCTTGTTCAGTGTTTTAAGGTGTGGACATGGACATTATGACTTATGCAGGCTTTTGACAGACATATTGATTTCTGTGCGCTCTGCCTAAAATGccattccagttcatcccagataTGTTCCATCAGGACTCGACACAGGCCATGTTGTTGTTCTCTTGCAAGCACTATGTTCGTCCTCTACCCCAGCTCTGTGATAGTGTGATATCATGGTGGTAGATGGACACCGACATCAAAAATGTCAACGGCTCCCATTAGAAAACAAACTAGccaaactaaaaaaagaaaacctccaCGCAGCACATGACCGCTGCTGTGCTCCATTACCTGTGGTGATGAAATTCCTAGTCCGTGTGGGACACACAATGTGTGCTGTGGTGGATTCTGCCGTTTCTGCGACTATAAGCAATAAAAGATAAATCGGTGGTTTTGCTAGAGAGAAGCATGAACTCCTGCCAACCAGAAGTACGTCTTGTGTGTTCCTTGCAAAGTTGTCACGTATAAAATAACCACCATTGTATAGACTTGaaattctaaaaacaaaaaagttctgcaaagttttttttaaactcacagagatatttaatttccataaacatacaaagaatcccattacaaatatttacaaagtcTCTATGTGCTGATTGTCTGGGTTGTACACGGATTTAAAGGTCCAGGAGCTCTCTGCCACATTTCGCAGTTGCTACTCTCTCCAGACGAGACTGGGCCTGGTCAAATGACTTGTTAAGTCTACTCAGGGCTAGATTTTGTTCCACCATCTTATTCTGGTATCCTGCAAGTTTGCTCGTTTCCTTCGAGAGTTTTTCTCAGCTCAGCAATGGCTGCGTATCCAATCTTCGCCTCTTCCGAGCCACGGTCCATTGTCTCCGCTTGTGATCCGCGGCGACAGACGGGTCCGACTGAGGGATGAAGAGGCGCGTCGTCTTCACACCGCGCACGCGCAGCCTCGACTTGAACCTCCCGCGACTTTTCAAAGCGCTGCGGGCTGGGAAGCACTTCCGGGTCAGAGGTGAAATGTCTCCATCTCCCTGGAAACGGGTGAAACAAATGTGAGGATGGAGGACAGACAGCAGGGACAGGATGGACAGCACAGACAGCTCACACAGCTCACACAGCACAGGCCCTGCGATGCGCCTCGGCTGCGGCTGGAGATCGAGCAGGAGAAGCAGATGAAGTGAGTTTCTGCACTT

Function

GO: NA

KEGG:

id description
K19366 SPG20; spartin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14002 lncRNA upstream 39484 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 83503 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 83543 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 210809 7967594 ~ 7967898 (+) True G11248
TU13921 lncRNA upstream 211396 7966988 ~ 7967311 (+) True G11246
TU14063 lncRNA downstream 238916 8433588 ~ 8475800 (+) True G11363
TU14218 lncRNA downstream 886274 9080946 ~ 9084621 (+) True AMCG00016136
TU14239 lncRNA downstream 901121 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 901917 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 902597 9097269 ~ 9097927 (+) True G11508
AMCG00016121 mRNA upstream 669 8174974 ~ 8178038 (+) True AMCG00016121
AMCG00016114 mRNA upstream 61331 8113021 ~ 8117376 (+) True AMCG00016114
AMCG00016113 mRNA upstream 85908 8082145 ~ 8092799 (+) True AMCG00016113
AMCG00016112 mRNA upstream 126987 8048792 ~ 8051720 (+) True AMCG00016112
AMCG00016117 mRNA upstream 133762 8034903 ~ 8044945 (+) True AMCG00016117
AMCG00016123 mRNA downstream 4202 8198874 ~ 8202539 (+) True AMCG00016123
AMCG00016122 mRNA downstream 12167 8206839 ~ 8225134 (+) True AMCG00016122
AMCG00016126 mRNA downstream 32459 8227131 ~ 8234032 (+) True AMCG00016126
AMCG00016124 mRNA downstream 119471 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016128 mRNA downstream 328789 8523461 ~ 8524540 (+) True AMCG00016128
TU13604 other upstream 1513159 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 1517039 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 3750648 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 5416988 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 873609 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 904748 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 1028740 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 1364792 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 1404143 9598815 ~ 9599156 (+) True G11660

Expression Profile