RNA id: AMCG00016121


Basic Information

Item Value
RNA id AMCG00016121
length 2152
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00016121
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8174974 ~ 8178038 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTGCACGTCGCAGCAGCCAAGAGAAAATGAATCTGGCAGGACTGAGCCAGGGGGATGCTGCTCGGTCTCAGGTGGCAGCGAAGACAAAGCTAAGAACTGTGCTGGGGGTCTTGAGTGAAAACGACCAGTGTAGCCGATCCTTTGGGCAGtGCTCTCTGCTCTCCAAAAATGGATCGGTTCTGGATAGTGCATTCCCTTCAGCCCATAACCCTGCTTTTCCTAGCTATCCTTCAACCTCCAGCTTTGAGATCTTTGTGGAAGGCTCCTCACAGTCTACCCAGTCCCACTCCAGCACAAGTGGGGAAGTGGTGCCTTGGATGCATAATGAAGATGACTCTTTGCTGCAGCACAAGGAGTTCCGTCTCTTCTTGGAAATTAGTTCGGGCTCCTGTATGGATGCTTCCATGCAGTCTCAGCCTGAGGATGATCATTTGATGCCTCCAGATGTACTAGCTGTGCTGGAATACTCTGAGGACATCTACAGACACTTGCGGGAAAGTGAAGTCAAACGCAGACCAAAGCCCGGCTATATGAGGAAGCAACCAGATATCACAAATAGTATGCGTGTGATCTTGGTGGACTGGCTGGTTGAAGTTGGGGAGGAGTATAAGCTGTGCTCGGAAACTATCTATCTGGCTGTGAACTACCTTGACCGGTTCCTGTCCTGCATGTCAGTCCTGCGAGGGAAGCTGCAATTGGTGGGAACTGCAGCGGCCATGCTTGCCTCAAAATATGAAGAGATCTATCCCCCTGAAGTGGATGAGTTTGTATACATCACAGATGACACGTACACCAAGAAGCAACTTCTGCGGATGGAACACCTGCTCCTGAAGATCCTGGAGTTTGATCTGACTGTACCTACAACCTATCAGTTCCTAAAGCAGTTCCTGGGGATCGAAGCTGTCTGCAGCAAAACTGAGAACCTTGCTCTGTACGTGGCAGAGCTAAGCTTGCTGGAAGTGGATCCATTCTTAAAATATGTTCCATCAAACATTGCTGCTGCAGCATATTGTCTCTCTAACTTCACACTCAATGGGGAACTATGGCCTGAATCCCTGCGTGCTTTTACTGGATACACTATATGGGAGATATCTCCTTGTCTGAAAGATCTTCACAAGATGTACCTTGGTGCAGCAAGTTGTCCACAGAAAGcaataatggaaaaatacaggAGCTCAAAGTACTGCAGTGTGTCCCTAATAACTCCACCTGATAGTCTGCCATGTTAAGACCTGCTTTTTGGAGCATCTGTATGAATGGGAACAAACTTGGCACTTAACTCCTATCAGCTGAAgagttgatttttatttatttggactCCTTAATGTATGCAGGACATCTCATGAAAtctttttttaactatttttataTGACCAATGTTTAGGCTAGGTAGTTCATCTTGGGTGTCTATCAAGCtaacaataaatgtttttattcaaagtgtttccttttttttggtgCAGAATTAATTTGACCTCATTTTAGTGTAAGCAATGTCTTATACCCTTGTATCATTAACTGAAAAGTCCAGTGTTTTAATGGGTTTGCCATTGCTATTTCCCATTGTGAACTGGCTTAATTTCAACCTTGCCTAGATAAGCAATATTACAATTGTTGAATGGGGACCTTCCCTGTGAACATGACAGGCATAAGCACAAGGACCAGATTATGTTTTAAGATGCTATCTTGAACTCATCCCCTGCTTAACAGGCAGAGCTTTGTGTCGTAGCCATCTCCGATTATGGATATCTTGCACAGTGACATGGTTTAACCTTAATTAGGAATTCCTCTTTTAGAAGTCCAAAGGTTGTCCTTTGACTTCACCACTCACTCAGTGAGCTAGTTTTGCATGTTGCTAAAGATGTGTGCCAGACACCACCAATGTGAAATTTCAGATTCAGAATTAAATACTgtgatttaaatttaagcaaCTTACCCATGAATTTGGTGATATGGTTCTGGGTCTTACCATGGATGCTTAAGCAGCAGCAGACCTCTCTGGGATTTCGTCAGACTTCTGGTTTCAGTTAATGTGCAGTGTAATGTTGCTGGTGTTCATATTGCGGACTCTTTAATCCAGTAGCTATTCTAAAGTTAATTTGCAAATGGTTGCGGTTTGTGGGTCATAGGTTTTCCCCCTAGAATTTAAG

Function

GO: NA

KEGG:

id description
K06627 CCNA; cyclin-A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14002 lncRNA upstream 35751 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 79770 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 79810 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 207076 7967594 ~ 7967898 (+) True G11248
TU13921 lncRNA upstream 207663 7966988 ~ 7967311 (+) True G11246
TU14063 lncRNA downstream 255550 8433588 ~ 8475800 (+) True G11363
TU14218 lncRNA downstream 902908 9080946 ~ 9084621 (+) True AMCG00016136
TU14239 lncRNA downstream 917755 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 918551 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 919231 9097269 ~ 9097927 (+) True G11508
AMCG00016114 mRNA upstream 57598 8113021 ~ 8117376 (+) True AMCG00016114
AMCG00016113 mRNA upstream 82175 8082145 ~ 8092799 (+) True AMCG00016113
AMCG00016112 mRNA upstream 123254 8048792 ~ 8051720 (+) True AMCG00016112
AMCG00016117 mRNA upstream 130029 8034903 ~ 8044945 (+) True AMCG00016117
AMCG00016116 mRNA upstream 144756 8013819 ~ 8030218 (+) True AMCG00016116
AMCG00016120 mRNA downstream 669 8178707 ~ 8194672 (+) True AMCG00016120
AMCG00016123 mRNA downstream 20836 8198874 ~ 8202539 (+) True AMCG00016123
AMCG00016122 mRNA downstream 28801 8206839 ~ 8225134 (+) True AMCG00016122
AMCG00016126 mRNA downstream 49093 8227131 ~ 8234032 (+) True AMCG00016126
AMCG00016124 mRNA downstream 136105 8314143 ~ 8326539 (+) True AMCG00016124
TU13604 other upstream 1509426 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 1513306 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 3746915 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 5413255 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 890243 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 921382 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 1045374 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 1381426 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 1420777 9598815 ~ 9599156 (+) True G11660

Expression Profile