RNA id: AMCG00016133


Basic Information

Item Value
RNA id AMCG00016133
length 1404
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00016133
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8810847 ~ 8820708 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGCGGGAGAATGTCGGTACTGTAAACACAAGCAAGTGTGTTAGGCTTctcttccctctaaaaataaaCCCATATATTAAAACCACACCAACACACCGAATTAAAATGAGTCTGTGGGTGGATAAATACAGACCGACCTCTTTGGCCAAACTGGATTATCACAAGGATCAGGCCAGCCAGCTGAAAAACCTGGTACAAGGAGGAGACTTCCCACATTTGCTGGTATATGGGCCATCAGGCGCTGGGAAGAAAACGCGGATCATGTGTTTGCTACGAGAGCTGTACGGGGCCGGAGTGGAAAAGCTGCGCATTGAGCATCAGTCCATAACGGCTCCATCCAAAAAGAAAATCGAAATCAACACATTAGCCAGCAACTACCACCTTGAAGTCAATCCTAGTGATGCTGGGAACAGTGACCGCGTGGTGATTCAGGAGCTGATCAAGACAGTCGCACAGTCTCAGCAGATCCAGTCCAGCGCCCAAAGAGAATTCAAAGTGGTGCTTCTGACTGAAGTGGATCGGCTCACAAAGGATGCCCAGCATGCCTTGCGAAGGACCATGGAGAAATACATGTCCACCTGCAGACTGATTCTGTGCTGTAACTCCACCTCCAGAGTCATCCCACCCATCCGGAGCAGGTGCCTGGCCGTGAGAGTCCCTTTGCCGAGTGTGGAAGAGgtctgcAGTGTGCTGAGCAGTGTGTGCCGGAAGGAAGGGCTGACGCTCCCCGGAGAACTTGCAAAGCATATTGCGGAGAAGTCGGGGTGCAATCTCCGCAAAGCCCTGCTGATGTATCCCTTCTCTGTGGACCAGGACATCCCCGAGACTGACTGGGAGGTTTACCTGAAGGAGACTGCCAACGCCATTGTGAGCCAGCAGAGCCCCCAGAGGTTGCTCGAAGTCCGTGCAAGACTTTATGAACTTCTCACCCACTGCATTCCTGCCGAAATCGTGATCAAGGGCCTCGTCTCAGAGCTGCTGAGCAACTGTGATGGACACATGAAGGCTGAAGTGGCACAGATGGCGGCGTACTATGAGCACCGGCTGCAGCTCGGCAACAAAGCCATCTATCACCTGGAGGCCTTTGTGGCCAAGTTCATGGCCATTTATAAGAAGTTCCTGGAGGATGGGCTGGACAACATGATGTTCTGATGTGTTTAATATACCGTCTCTGCCCGTTCAGTTACAGTTCTCACGTGTAAAGTCCACCAATTTTTGTAATAAAGTATAATTCCTTAACTATGCTCATGAACTGTATTTATAAATCACAGGACAGAgctgcatttccaaacattgCTATACCTCTCCTACATTATCGGAATGAAAAAGCTACAACCCTCTAAATAAGACATTGCAAAATGGAAAACCGTGTTAGCAGTTTCAAATTCTCATTTTAAATTGGAT

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10756 RFC3_5; replication factor C subunit 3/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14046 lncRNA downstream 479044 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 489805 8320697 ~ 8321042 (-) True G11345
TU14025 lncRNA downstream 616415 8191546 ~ 8194432 (-) True G11326
TU14008 lncRNA downstream 636873 8173689 ~ 8173974 (-) True G11314
TU14003 lncRNA downstream 672177 8136414 ~ 8138670 (-) True G11309
TU14153 lncRNA upstream 5973 8826681 ~ 8827760 (-) False AMCG00016134
TU14210 lncRNA upstream 235196 9055904 ~ 9059100 (-) True G11482
TU14314 lncRNA upstream 493292 9314000 ~ 9314447 (-) True G11571
TU14397 lncRNA upstream 615094 9435802 ~ 9498753 (-) False G11633
TU14398 lncRNA upstream 675483 9496191 ~ 9498753 (-) True G11633
AMCG00016131 mRNA downstream 139669 8657202 ~ 8671178 (-) True AMCG00016131
AMCG00016130 mRNA downstream 166499 8594090 ~ 8644348 (-) True AMCG00016130
AMCG00016129 mRNA downstream 316264 8435120 ~ 8494583 (-) True AMCG00016129
AMCG00016127 mRNA downstream 377662 8416250 ~ 8433185 (-) True AMCG00016127
AMCG00016125 mRNA downstream 453361 8355679 ~ 8357486 (-) True AMCG00016125
AMCG00016134 mRNA upstream 2837 8823545 ~ 8827405 (-) True AMCG00016134
AMCG00016137 mRNA upstream 160372 8981080 ~ 8990420 (-) True AMCG00016137
AMCG00016138 mRNA upstream 181394 9002102 ~ 9027841 (-) True AMCG00016138
AMCG00016139 mRNA upstream 230352 9051060 ~ 9055579 (-) True AMCG00016139
AMCG00016141 mRNA upstream 268461 9089169 ~ 9110807 (-) True AMCG00016141
TU14024 other downstream 616415 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 4890423 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5271654 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 5775664 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6100162 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 2026126 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 2026223 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 3502453 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 4041391 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 4041391 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile