RNA id: AMCG00016135


Basic Information

Item Value
RNA id AMCG00016135
length 3036
RNA type mRNA
GC content 0.59
exon number 12
gene id AMCG00016135
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8964206 ~ 8978905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCGGCTAAACACATTGAACAAGTGTGCCTCTATGAAACTTGACGTGAACCTTCCCAAAAAGAAAAGTGAAGACTCCGATGAAGAAGACTTGTTTGCAATCAGTGACAAATGGACCTTCGAATGGAGCAGCAGGCGCTGGTCGAGGCTGCAGGATATTGACTCATTCCTGGGCGGCACGGACAGCCAGGGCCCCCCGGGGGGAGTGCCCCTGAGGAACACGACCAGCAGCGAGAGCGTGCTGACGGAACTGAGCGAGCCGGAGGTCTCCTCCTTGCACAGCGAGAGCAGTGGGGGAAGCGAGGGCCGGAGCCTGGCAGGCAGCCGAGGTGCCACCACAGAGGACTCTGACAGTTCAAGACGGAACTGTGCAGAATCCAGCGCCATGCCCGACTCcacctctctcgctctcccacAAGCCCCCAAAGACATCACCAACTACTCCTCGCTCTCTGCTAAGAATGGAAGGCATACCAGGACCCGGGCCAAGGACTTTCTAAGGCGCATGGAAACTCTGAGAACCAAAGGCACGACTGGCAAAGCCAAGAAAACCCTGGTGATCAGCGGCCCTGTCCTGCAGCAGGAGCCCGAGTCCCTGAAGACCATGCACTGCGTGGAGATCGTGAACGGAGACCTGGGCGGGTTGGAGCAGCCGCGGGGCAGCTTCCCCTCCCAGTCCAGCAGCGAGAGCAGCAGCCACTCAGAGGCAAGCAGCAGCACAGTCAGCACGCCCAGCCTGAAGGAGCGCAAGCCCCACCGGGCCTCCCATAAACGCAGTGGCATGTACCTGGAAGACATGGACATCTTCTCGGGCGCCCAGGTCAAGAAAGTGGCCGAGCAGAACCGCAGGAACGAGTTCCGCTCCTATGAGGACCTGGTGGTGCATATCCCCAAGGACCACAAGCCTGGCACCTTCCCCAAAGCCCTGTCTATTGAAAGCCTTTCCCCCTCGAACGCCGGGGCCTCTGTCAACTGGCGCACAGGGAGCATCTGCCTGGATGCCCAGCGCCACTCTCAGAATGCCAAAGAGTCGCGGCCTGTGACCCAGTGCTGCCCAAGGGGGAGCCGGATCAGCGTGTACGACAATGTGCCTGGCTCCCACCTGTACGCTAGCACTGGGGACCTCATGGACCTAGAGAAGGAGGACCTCTTCCCTCACCTGGACGACATCCTGCAGCACGTCAACGGCCTGCAGCAGATTGTGGACCACTGGTCCAAAAACGTCCTGCCTGAGCTGCAGAGTGACGGGCTCACGCGGGGGGAGTCTGAACTGCAGTCATCCAGTCAGATCACACTGGACTTCGAAGGGAATTCTGTCCTGGAGGGACAGACCACCCCCAGCGACGGGGACAAGGACGGTGTGTCCCTCAACGAGTCAGACTCCACGGGAATGAGGGAGAGGCGGGACTCTGGAGTGGGGGCTTCATTGACCAGGCCCAACAGGCTGCGGTGGCCCAGCTTCCAGATCTCCAACCGTCTGAGCCACTCGGTGGCCTCGCTGCAGATCACCAACCAATCAGCCGGCCAGCTCAGCCTGCTGCAGAAGTTCTCCCTGCTGCGCCTCACCGCCATCATGGAGAAATACTCCATGTCCAACAAGCATGGGTGGACTTGGTCTGTACCGAAGTTTATGAAGAGGATGAAAGTGCCAGACTACAAGGACAAGAACGTGTTTGGTGTCCCTTTGATCGTTCACGTACAGCGGTCAGGACAGCCCCTTCCCCTCAGCCTTCAGCAGGCCCTGCGGTACTTGAGAAGCCAGTGTCTGGACCAGATCGGATTATTCCGGAAGTCGGGCGTGAAGTCCCGGATTCAGGCCCTGAGGCAGATGAACGAGAGTTCGCCCGACAACGTCAACTATGAGGACCAGTCGGCCTACGACGTGGCCGACATGGTGAAGCAGTTCTTCAGGGATCTCCCAGAGCCTCTACTCACCAGCAAACTGGGGGAGACCTTCCTACACATCTACCAGTACGTGCCCAAGGACCAGCGGTTGCAGGCAGTGCAGGCTGCCATCATGCTGATGTCAGACGAGAACAGGGAGGTGCTGCAGACGCTGCTATGTTTCCTTAGCGACGTGACCTCAGTGGAGGAGAACCAGATGACCCCGATGAACATCGCAGTGTGTCTGGCCCCCTCCCTGTTCCACCTCAACATACTCAAGAAGGACAACCTGTCGCCAAGAGCCATGCAAAAGAAATACGCCACGGGCCGACCCGACCAGAAGGACCTTAATGAAAACCTGGCGGCGACCCAGGGCTTGGCTCATATGATCATGGAGTGCAACCGTCTCTTTGAGATCCCTCACGAAATGGTCACGCAGTCCCGCAACTCATACGTGGAAGCAGACATCCAAGCCCCGACCCTGGAGGAGCTGAGCAAGCAGCTGGAGGAGGATGATGGCACCTACCAGACCCACATGGAGAACCTGACCCAGTCCTTGCTGAAGGAGGCCAGGGAGAAATCCAAGGGTTGGGTGTCCTGCTCCAGCACGGACAACACCGAGCTCTCCTTCAAGAAGGTAGGAGACGGGAGCCCCCTGCGACGGTGGCGGGTGTCAGTGGAGGTGGAGGCCCCCCCCTCTGTAGTGCTGAACCGGGTGCTGCGGGAGCGACACCTGTGGGACATTGACCTGCTGCAGTGGAAAGTGATCGAGACCCTGGACAAGCAGACTGAGATTTACCAGTATGTGCTGAACCGCATGCCGCCGCACCCGAGCCGGGACTTCATCGTACTGAGGTCCTGGAGGACAGATCTCCCCAAGGGCACCTGCGCGCtggtgtctgtgtctgtggacCACGAGGACTCGGTGCCCATGGGCGGGGTGAGGGCGGTGGTGATGGACTCGCAGTATTTACTCGAACCCTGTGGCTCCGGGAAATCCAGACTCACACACATCTGCAGGATGGATCTCAAAGGAAGGACACCGGAGTGGTACAACAAGGCGTTCGGACACCTGTGTGCGGCAGAGGCGGCCCGGATCCGGAACTCCTTCCAGCCTCTGGCCACCGAGGGGCCCGAAACCAAGATCTGA

Function

GO: NA

KEGG:

id description
K20632 DLC; deleted in liver cancer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14063 lncRNA upstream 488406 8433588 ~ 8475800 (+) True G11363
TU14002 lncRNA upstream 824983 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 869002 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 869042 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 996308 7967594 ~ 7967898 (+) True G11248
TU14218 lncRNA downstream 102041 9080946 ~ 9084621 (+) True AMCG00016136
TU14239 lncRNA downstream 116888 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 117684 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 118364 9097269 ~ 9097927 (+) True G11508
TU14243 lncRNA downstream 122006 9100911 ~ 9101316 (+) True G11510
AMCG00016132 mRNA upstream 155171 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 439666 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016124 mRNA upstream 637667 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016126 mRNA upstream 730174 8227131 ~ 8234032 (+) True AMCG00016126
AMCG00016122 mRNA upstream 739072 8206839 ~ 8225134 (+) True AMCG00016122
AMCG00016136 mRNA downstream 94181 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016140 mRNA downstream 138997 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016143 mRNA downstream 258795 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016145 mRNA downstream 417697 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 515557 9494462 ~ 9498792 (+) True AMCG00016156
TU13604 other upstream 2298658 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2302538 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4536147 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 6202487 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 89376 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 120515 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 244507 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 580559 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 619910 9598815 ~ 9599156 (+) True G11660

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018416 False 710 mRNA 0.50 5 NC_007126.7 33477108 ~ 33495048 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_16470293_16490666.mRNA True 4763 mRNA 0.48 14 CI01000304 16470253 ~ 16492041 (+)