RNA id: AMCG00016136


Basic Information

Item Value
RNA id AMCG00016136
length 1467
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00016136
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9068281 ~ 9089033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGTTTTGGGGACATGGAGCCTGCAGTTACCTCACCCAGAAGGGCTACCCCACCTTCACAGCTGCAGCCCAGGAGGACTTAGTGACAGAAGTGTTCCTCCGTGGCCTGACCCCCGAGTCCCAGCATCACCATGTGTGTCTGAGTGCACCTGCCTCTCTGGAGCAGGCCTTAAAGCAGACGAAGGACAGGAGTCCCAGGGCTTGTCCATGGCCTACACGACAGCTGGAAATTGCCAAAGTGGCAGCTGGGGATGCCGTCCAAGTGCGACCATCAACCCCGCTGATGCTGGCGCTGTGGATAAGCGGGACTCTTCTGCTCTGCTGGCACTCCAAGCCCTATCCTACAGGGAAACAGGAGGGGGATCCAGCTTTAGAAAGAGGCTACAGAGTTGAGTTCCACGAACCAGACACCAGCTGGAAGTCTGATCCTTCAGAGTTAGAAAAgaGGAACAAGCACAAGGTGCCCCAGGAGAAGATTGCTCAGATGCTGGAGAGATTTGAACAGCCCATGACTCTAGACATAGTTCTGAACTCGCAGGAGCCCTCCCACAAAGCCTCAGCAAGGCCCCCCGCGCGCCACAGACAGAGAAATGGGGGGATAAAACTGAAGTCCAAACAGAGGAGAAACGCAAGACATAGAGGACTCCAGAGAGCTAAAGCGGAGGACAATAAAGGCACTGAGAACCACAGAGATGAGGTGTGTCTTGGAGGAGCCCAGGACCATGGAATTTCACCAACGGGTGACAGCACTGCTGCTCCCTTAGAGAGCAATGGCACATGGCATGAGAAGTCCAATGGAAGATCCTCAACTCCAAGGAAACTGAGGCGACCCTACAACTTGGCTCCCACGTTTGATTTTGCACAGCAGAGAGAAACTAGCTGTGGAGGggacacaaagaaagaaatcgCCTTTCCTGAAGACCAAAATGAGGGGACTGAATCACAGAGGTCCATGCCCGGAGTCTCTGTAAGAAAGGTGATTGAAGATGAGAGGAAGAAGACCTGTGGAGGAGCAAAAGACACGGCTGCCAGAAACTGGGGTTCTGTCAGTGTCGTGCCTATGGCTGAAGACCCCATAGAGGCATGCATGGGGTCTCCCACAGGACACAAGCAGTGCTGTACACCAGCCAAGGAACATGCTCCTTTTAAAGACATGTTGGAATTTGTGGAGCCTAGCGCTCAGACTCTCGCAGAGGAACAAAGCGGTTCTGAAAGAGATTTGCTGGAAGTCGGAGAACACCAGAGGAACAGCATCGCCTACGGACGATTCCCTTGCCTTCGTCTGTCCCTGGGGCTCGCTTTGCAGCTGGAGGAGCTGTTTGGACCCATCGGTTTGGAGTTTGGAACTGTGGTTGGCAATGAAGATGAGAGCAGCTGTGCAGAGATCGGAGGATTGGCATTTCAGCatacagagagaaaagacaAAACCCGCAAACACCCGTCCACAGTTTCCTCCACTGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14063 lncRNA upstream 597286 8433588 ~ 8475800 (+) True G11363
TU14002 lncRNA upstream 933863 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 977882 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 977922 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 1105188 7967594 ~ 7967898 (+) True G11248
TU14239 lncRNA downstream 6760 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 7556 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 8236 9097269 ~ 9097927 (+) True G11508
TU14243 lncRNA downstream 11878 9100911 ~ 9101316 (+) True G11510
TU14244 lncRNA downstream 14592 9103625 ~ 9104182 (+) True G11511
AMCG00016135 mRNA upstream 94181 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 264051 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 548546 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016124 mRNA upstream 746547 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016126 mRNA upstream 839054 8227131 ~ 8234032 (+) True AMCG00016126
AMCG00016140 mRNA downstream 28869 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016143 mRNA downstream 148667 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016145 mRNA downstream 307569 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 405429 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 420991 9510024 ~ 9521955 (+) True AMCG00016157
TU14219 other upstream 1064 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2407538 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2411418 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4645027 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 6311367 2759347 ~ 2761719 (+) False AMCG00016030
TU14242 other downstream 10387 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 134379 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 470431 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 509782 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2779792 11868825 ~ 11871735 (+) True G11921

Expression Profile