RNA id: TU14218


Basic Information

Item Value
RNA id TU14218
length 2433
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00016136
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9068281 ~ 9089033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACTATCATTTCTANNTGCTCGGTGCTGATTAAACTTCTGTATTACAGACCACTATAATAAACCAGCTTTCAGAAGATAGTATATTTTCCCCATCATGGATTTCCAACCCATTCTCCTTCTTGCAGGCTTTAGAAAGAGGCTACAGAGTTGAGTTCCACGAACCAGACACCAGCTGGAAGTCTGATCCTTCAGAGTTAGAAAAgaGGAACAAGCACAAGGTGCCCCAGGAGAAGATTGCTCAGATGCTGGAGAGATTTGAACAGCCCATGACTCTAGACATAGTTCTGAACTCGCAGGAGCCCTCCCACAAAGCCTCAGCAAGGCCCCCCGCGCGCCACAGACAGAGGTGGGGTGGCCCTGGCAGCCCTGAGGCATATCCCgtcacacaaacagaaaccGAACACAATGAAAAACCTTGTTAGGGCTAAGATGCATCGCTCTAATCAGGGGCTTCTCCTATTCATTTGTGTTCATCCTTGGTTTGCTATACCCGGCAAAAAATGTTCATCCtttttggggtggggtgggggctgGAAAACAGGAAATCACATATTAGAATCTTTTAATTACCAGTTAATTAGTCCTAGCAAGGTGATTGTATCTctgcaatataaatgtattttttcccctaatAGGTTATAAATCAACTGCAAGCAATATGTACTAACTGGAAGGCTGCGAGACCCAGTTAAACTTTGTATTCCTCTTCTTCAATCAAAAGCCACTGACAGTAGGGTAATTAGACAGAGATCTATTTAACAAACCACTGTCCCAGACCGTGAGCCCAAACCTTTTGAGACGTGGCATCTCCTGTGTCTTTACAGACGCACTGTGACGAACAAAACAACCACCGATATGATATTGATCACTCGGACAAATGTGATGGATCAAACTAGTCAATGAAtgttattacatgtatttagttTCAGAAGATTTTGCATTACTAAACCATTTTTTATCAccttaaattgtgttaaaatcagtgtgtgtgcatagaGCTCCAtgcaatttttgtttttctcatgttGTCGATATGTAAGGCAGTGATAACGTGTTTTATGTCTTGGGCAGCTGTCCATTGAGTAGTGAACATTTGAAGTctatattctgtgttttttaaatgaagtgctTAGTCCTGGGGACTGGCatattgttgttctgttttaactttctaaatttaaacatttcaggaatttattttctttaactcAGGATAATCAACTTCTCTGGTGCTTTCATCCTTGCTGGTGTCTGCTTGTCTGAGCTGCAGCAAATAAGATCATATATTTCAGGTGTAATACATTTGGCTTTATGTATTAGTTTTATTGCAAATTTGACTCTACTCCTACTTATTATATTCTGCATTTATGACTCTTTCTCCACTCTCTGTCCTTAAGAAACACTCATCCATGCCTAATTTTCACTTGGTTGATATAATTTGACAATGTCAGTTGGACTGTTAGCAGTTACCTCCTCTGTTGCACTCAATCTCAAATTATGCCTACGCTGTAGAACGGCAGTGCAAGAAGAAGCCCCCAGGTGGGGAGGATTTAGCAGCTGTCCCGCAGAGAATCTGTCACGTGGCCTCTTAGAGTAGATGGAGTTGGAGGCCATTACACATATTGCCCACAGCCTCCCCCCGTGTTTTGCCATGCTGAAGTGCCACCAGCCTGGGCACTTTAGAACTGCATTGATGTATCCCTGTGGAGGTCTGTTTTCACTTCAAGTTCCCTGATCCCTTAATCACTGCTTCTATGTATACCTTGCTTCTCTTTGGCCGTATTGAAGTTGGTTTCAACCTGAGAAGAGACATTCTGGCTAAAGCATGGACTACATTTTGAAGAACTGAACACATTGCTATtcacatataatacaaataccAGTGCTCTGTCATGAAGTGCATGATGCAACAAGTGTGTGAATTTGCCAGGGTGTGGGGGATTTTCACATGattatgattttgattttattttcagacagCAGTGcatatagattttgttttttaacagcggttccttttttaaaattcaatgtttaataatgctttttaaaactcTGGAGTGGATTACAATTTACACTTTACAAATTCCTTTGGATGGCATAATGGATGTTGTGTTCCTCTCATGATTTTGTATTACCTTTGGTTCGTAATGATAGTAATTCAGtgtcattttatatattgttttgctcTTGATTTAGATTAGCACTCTGTATTACTCAATCAGAGAGGCTTTgggaagttaaaaacaaatggtttcATATTTAATCTCTCACAGGGGTAAATATAATGGGGTGATTGTaggaattttaaaaaaattacctTTAAGTGACATACATGATGTAGCACCAGCACTGTACACTGGACTGAAGAAGAATTTAGAAATCAAGCAAAAACTTGAGAATCGAGACACATTGAAATACGctaaatcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14063 lncRNA upstream 605146 8433588 ~ 8475800 (+) True G11363
TU14002 lncRNA upstream 941723 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 985742 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 985782 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 1113048 7967594 ~ 7967898 (+) True G11248
TU14239 lncRNA downstream 11172 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 11968 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 12648 9097269 ~ 9097927 (+) True G11508
TU14243 lncRNA downstream 16290 9100911 ~ 9101316 (+) True G11510
TU14244 lncRNA downstream 19004 9103625 ~ 9104182 (+) True G11511
AMCG00016135 mRNA upstream 102041 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 271911 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 556406 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016124 mRNA upstream 754407 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016126 mRNA upstream 846914 8227131 ~ 8234032 (+) True AMCG00016126
AMCG00016140 mRNA downstream 33281 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016143 mRNA downstream 153079 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016145 mRNA downstream 311981 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 409841 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 425403 9510024 ~ 9521955 (+) True AMCG00016157
TU14219 other upstream 8924 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2415398 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2419278 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4652887 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 6319227 2759347 ~ 2761719 (+) False AMCG00016030
TU14242 other downstream 14799 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 138791 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 474843 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 514194 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2784204 11868825 ~ 11871735 (+) True G11921

Expression Profile