RNA id: TU14219



Basic Information


Item Value
RNA id TU14219
length 978
RNA type TUCP
GC content 0.46
exon number 5
gene id AMCG00016136
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9068281 ~ 9089033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAACTTTACAACAGAAAGCCAAACCTTATCATCATGAGGGGTCTTCCAGGGTCAAGGAGAACAGGTCGAGCTAAaaaaataataagtgcCTATGGCCGAGGAGTGATCTGCAGCACGAATGACTACTACAGAGATAAAAATGGAGAAATGAATTACAGACATGAGTTAAAGGATATTGCACATCGATGGAATCAAGAGAAAGCTGAAGAAGCCATGCAATGTGGAGAAGATCCAGTTATCATTAATAATACCAATGTGCGGCTTTGGGAAATGAAGCCATATGTTATAAAGGCTCTTCAATATAGTTATTGGGTCACTTTCATAGAACCTGATAAAGAGTGGCATTGGGATATCGATAAACTGGCAAGAAACACCAAGGACAAAGTGCCAAGGGTAGTAATAGAAAGAATGTATGATNNNNNNNNNNAATGCCATCATATCTATGATGTACTACGCTCATAGTAGCCTTGGAGAAATTGAAGTTCGATCAGCTTCCTCAAGCTTTCCCAGCGACTTCAGACATCAAAGAGTTCACCCATTTAAANNNNNNNNNNAAAACTTTGAAAAAGACATAACTGTTATTGTTTCTATATGGGTTTTTTTCTAAAAActatttgcttttttaaaaaagattttaaaagattaaaaagattaaatatttgcaaGTTTGCTATTTTTAgttccctgtttttattttgtataactgAGAGAAAAGAGGTGTGTTTTGTCTACATCCAGCACTTGAATTCAGCTTCATAGAAATTAAAGATATTGTGCTGACTAAAGTTGTATTATTCATCCTAGACTGACCTGTTAGTGTCAGGGTTGCTGTGTAGCTCCTGATTTATATTGCTTTCATATTGCATCCCATACATAACTAAAACTACATGGCccaagtattttattgtttcaaatttgtaactttgatttaatacatgTAATCTTTGCTTTGATTTCCATCGCTTCCTCAACTTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14063 lncRNA upstream 592481 8433588 ~ 8475800 (+) True G11363
TU14002 lncRNA upstream 929058 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 973077 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 973117 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 1100383 7967594 ~ 7967898 (+) True G11248
TU14218 lncRNA downstream 8924 9080946 ~ 9084621 (+) True AMCG00016136
TU14239 lncRNA downstream 23771 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 24567 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 25247 9097269 ~ 9097927 (+) True G11508
TU14243 lncRNA downstream 28889 9100911 ~ 9101316 (+) True G11510
AMCG00016135 mRNA upstream 89376 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 259246 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 543741 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016124 mRNA upstream 741742 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016126 mRNA upstream 834249 8227131 ~ 8234032 (+) True AMCG00016126
AMCG00016136 mRNA downstream 1064 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016140 mRNA downstream 45880 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016143 mRNA downstream 165678 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016145 mRNA downstream 324580 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 422440 9494462 ~ 9498792 (+) True AMCG00016156
TU13604 other upstream 2402733 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2406613 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4640222 4427146 ~ 4428059 (+) True G10739
TU12970 other upstream 6297611 2759347 ~ 2770670 (+) False AMCG00016030
TU14242 other downstream 27398 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 151390 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 487442 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 526793 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2796803 11868825 ~ 11871735 (+) True G11921

Expression Profile