RNA id: AMCG00016139


Basic Information

Item Value
RNA id AMCG00016139
length 1891
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00016139
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9051060 ~ 9055579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTAATCACTGGGAAACCGAAACTTAAAACGATCCTCCCACTGTGTTGTTTTGCGGCTGCAACAGTAACTGCTGTCCAGAGAAGCAATGGCTGATAATATTGTCCACGCTTTGCAAAATATAAGTTTGCACCGCAGTGGCAGACGGAGACGTCGGCGCCGCAGACCCAGGGAGCTGTACATCCTAAGGGGTCTTCCAGGATCAGGGAAGTCGGTTTTGGCGAGGTAAATGCGACAATAAAGTGCAGTAACTCGGGATCTGAGTGATCTTTTGGCAGCTATAGATTTAAAAGtgtgaatataaaaatgtaaaaagctaCATGCAGTGTCTTCTAAGTCTGGACGAAAGCTGAGCTGCAATGTCCCGGAGAGATGCCAGCGTCAGGTGCGTTTGGTATGAATCTGTTTATCTGGgtggaaaaatgtaaatgtagtcTATACATGCCCACATTAAGTTGTATAAATACTTTATACACAAAATATGGAGTTTTTGATGTATCATATTAATAAGCCTATaagttaaatatatgttttggtcTTAACAACATGCGTAAAGGCTAATTTAGCTACAATGTTTGTTGTCCAGAGGTAGCCAggaaaatacatgcatgcatacgaCATAGTGTCTCAGACAGTAGTGTTAGGGAGATTTTACAATGCTTTACTGGTGTTTAGGAAATCTTCTCTAAAGTCTTTAATATACTCatcaacaaatgtatatatgtcGCACAGGTtcttttatgtttgtgtaaCTTGTGTTTGCTGCCTTATTGGCCAGGGCTCACTTGTAAAAGAGATGTAAACCCCAATGTGACTTCTCTACAGGAGAAACACATAAACATACTATATCCTCTTCTTCCCGGTATTGATCTATTGCTTTTATCttttgtatcatttaaaaacgATTTCCCCATTTTCGACTGCACATGTGTGGGTTATGAAAGCTGTTAAGAAATCTGGGGGGAGGATTAGCAAACCAGACGCAAAGAAGCGACTGTTTCATGGCTGCACTGAGAGAAGACAGATCTCTTCTCTCCCTTTGTAATTTCTTTTTGTTAACAGGATTAATCCGAGTCCGTAGTAGATTTCATGTGTAAAGTAAGTTGGCCTATTTAAACATTATTCCCTGAAAACTGTATTCCCATGTACTGATGCAATGTGGTGCAAACACAATGTTACCACTGTGAAGGTGCCACCCGCTATTATATTGCCTTTTTAACTGAAGTTTCATGCATCTGTGTATGAATACAGTACACGAATACAAGCTATAGCCACCGTTGTCATATCATTGTTTCATTTCATGGCCAATGCAAACTGAAAACCAAAGCAACATGTTTTCGGGTGTCAACAATCAAAAACTTTGTTCAATGAGAATATGTTGCCAGTGTATGCATCCATTCTGTTCCATTTTCTTCTGcaggcaaataaaaaataattatggcCAGGCAGAGATTTTCAGCACTGATGACTATTTCAGAGATGAAAATGGACACTATAGATTTAAGGCCTCCTTACTGAAAAGAGCCCACAAATGGAATCAAATGAGAGCGAGGGAAGCCATGGAAGACGGAGAAAGCCCGATTATCATTGATAACACAAACATCCATCTGTGGGAAATGAAGCCTTATGTTGAAATGGTGAGGATGACTACATCAACATCCACGCCGACTGCGGGCTGCAACAAGCCGCGGCTCTCCCAGGCGGCGCTGCTGGCGGCTGTGCGGGGCGGGCTGGCGCTGCCTCCCGCGGCCGCTAGGTGGCGCCGCGTCTCCGTGGCTGCCTGCGCACGGCGGCTGGATTGGCGCAGCCAGAGACAAATTGGCGCCATTTTGAAGCCAAGAGGAGGATCAGAGCTGCAGAAGGGGAGACGATTGGCTGCTATTCATCAAACT

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14153 lncRNA downstream 223300 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 719257 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 730018 8320697 ~ 8321042 (-) True G11345
TU14025 lncRNA downstream 856628 8191546 ~ 8194432 (-) True G11326
TU14008 lncRNA downstream 877086 8173689 ~ 8173974 (-) True G11314
TU14210 lncRNA upstream 325 9055904 ~ 9059100 (-) True G11482
TU14314 lncRNA upstream 258421 9314000 ~ 9314447 (-) True G11571
TU14397 lncRNA upstream 380223 9435802 ~ 9498753 (-) False G11633
TU14398 lncRNA upstream 440612 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 440612 9496191 ~ 9498753 (-) False G11633
AMCG00016138 mRNA downstream 23219 9002102 ~ 9027841 (-) True AMCG00016138
AMCG00016137 mRNA downstream 60640 8981080 ~ 8990420 (-) True AMCG00016137
AMCG00016134 mRNA downstream 223655 8823545 ~ 8827405 (-) True AMCG00016134
AMCG00016133 mRNA downstream 230352 8810847 ~ 8820708 (-) True AMCG00016133
AMCG00016131 mRNA downstream 379882 8657202 ~ 8671178 (-) True AMCG00016131
AMCG00016141 mRNA upstream 33590 9089169 ~ 9110807 (-) True AMCG00016141
AMCG00016142 mRNA upstream 55698 9111277 ~ 9116154 (-) True AMCG00016142
AMCG00016144 mRNA upstream 63989 9119568 ~ 9183910 (-) True AMCG00016144
AMCG00016148 mRNA upstream 211622 9267201 ~ 9289324 (-) True AMCG00016148
AMCG00016151 mRNA upstream 278114 9333693 ~ 9358730 (-) True AMCG00016151
TU14024 other downstream 856628 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5130636 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5511867 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6015877 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6340375 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1791255 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1791352 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 3267582 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3806520 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3806520 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile