RNA id: AMCG00016143



Basic Information


Item Value
RNA id AMCG00016143
length 459
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00016143
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9237700 ~ 9286875 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCAGAGGCATTCCATCGGCACATTGTTGACAGAGGCACCATTGCAGCAACAGCACCAATAGCAGAGCTTCAGGTTGCAGACCCCAAGACCTATAGCACCCTGGTCTGTCTGGAGGAGTCCATGAATGCCACTGAAGTGGTCAGACTCTTTCGGCCCTTCTCGTGGCCGGAGTTTCTTTGCCACCTGCACAGTAAAAGCTCCACTTGCTCCCTGAAGAAGCGGGTGGTCAGCAGCATCACTGACACCTCTGAAGAGAGCATAGCCAAGAAGCCTATGGTGCGACACTGCATGCTCTCCATCCAGAGCTGTgcgtttttattgtattcaccCCGGAACTTCACATCAAACACCCCCACGAAGAAGAGGTACACTCCCATCAAGCAGTCAGCACCTGTGAGTGACATCAGCAGTGTAAaGGATCTGTTTTACAAGGACAACGATGACAAAAAGGGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14244 lncRNA upstream 133518 9103625 ~ 9104182 (+) True G11511
TU14243 lncRNA upstream 136384 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 139773 9097269 ~ 9097927 (+) True G11508
TU14240 lncRNA upstream 140889 9096589 ~ 9096811 (+) True G11507
TU14239 lncRNA upstream 141650 9095793 ~ 9096050 (+) True G11506
TU14313 lncRNA downstream 27123 9313998 ~ 9314434 (+) True G11570
TU14315 lncRNA downstream 44016 9330891 ~ 9333859 (+) True G11572
TU14444 lncRNA downstream 677089 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 681667 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 722164 10009039 ~ 10009385 (+) True G11678
AMCG00016140 mRNA upstream 118262 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016136 mRNA upstream 148667 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016135 mRNA upstream 258795 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 428665 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 713160 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016145 mRNA downstream 109727 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 207587 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 223149 9510024 ~ 9521955 (+) True AMCG00016157
AMCG00016158 mRNA downstream 245227 9532102 ~ 9550216 (+) True AMCG00016158
AMCG00016159 mRNA downstream 297488 9584363 ~ 9591639 (+) False AMCG00016159
TU14288 other upstream 11455 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 137664 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 165678 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2572152 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2576032 6654712 ~ 6661668 (+) True AMCG00016079
TU14381 other downstream 272589 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 311940 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2581950 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 3491349 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 4335004 13621879 ~ 13627711 (+) True G12348

Expression Profile