RNA id: AMCG00016145


Basic Information

Item Value
RNA id AMCG00016145
length 3347
RNA type mRNA
GC content 0.46
exon number 16
gene id AMCG00016145
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9396602 ~ 9406042 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCGCGGTGGAAAGCTCCAGAACGCAGACAGCGTTACACCCGGCGGGCGGGCGGCCGTCCGCGCTGTGGGCATGGAGACGCTTCTGGAAAGTTCTCCGGCTGCGAGATATAAACGGTCCGGGGGCAGCAGCGCCGGCCCCAGCGATAGCGGAGTGGCAGCGAGCCGGTGCTGTAAAGGAAACGGTAGAAGAGCAGGATATACAGTCCGCGGAGGTGATCCAGTGGAGTGGAGACCGAGATGTCGGTGGTGGGGTTTGATGTCGGATTTCAGAACTGCTACATCGCGGTGGCCAGGGCCGGGGGGATAGAAACGGTGGCCAATGAATTCACTGACAGATGCACCCCGGCTATTGTGTCCTTTGGCTCCAAAAATAGAGCTGTTGGTAATGCAGGTAAAAATCAGCTTATAACCAATGCTAAGAACACAGTTTCCAATTTCAAGAGGTTGCATGGCAGATCATTTGATGATCCTGTTGTCCAAAGTGAGAAAGGCAACTTACCATATGGCTTGGCTTCAATGCAAGATGGCAGAGTGGGTGCAAAGGTGATGTATCTTGATGAGGAGCACCACTTCACAGTAGAGCAAGTAACAGCCATGCTCCTGACTAAACTGAAGGAGACTGCTGAGAACAACCTGCAGAAGACCGTAACAGACTGTGTCATCTCCGTGCTGGCCACGGCCTTCGATCCTTACTTGGGTGGGAGGAATTTCGATCAAAGACTGGTGGATTTTTTCAGTGCGGAATTCAAGACCAAATACAGGATGGATGTGAAGTCCAAGGTCCGAGCCCTACTGAGGCTCCAGCAGGAGTGCGAGAAGCTGAAGAAGCTGATGAGCAGCAACTCCACAGACATCCCTCTAAATATCGAGTGCTTCATGGACGACAGGGATGTGTCTGGAAAAATGAACAGGGCTCAGTTCGAGGAACTTTGTGGCGATCTCATAGAGAGAGTAGTGGCTCCTCTGAAAGCAGTTGTTGAGCAAGCCCAGCTTCAGCTTCAGGATATCAGTGCTATAGAGATCGTAGGTGGAGCAACCCGGATCCCGGCAGTCAAGGAAAAGATCATGAAGTTCTTTGGAAAAGACGTCAGCACCACGCTCAATGCTGATGAAGCCGTGGCAAAGGGCTGTGCCCTGCAGTGTGCCATACTTTCACCAGTGTTTAAAGTGAGGGAGTTCTCCATCACAGACACGATCCCTTTCTCAGTCTCCCTCTCCTGGAGCACAGAAGTGGATGAACCCACAGAGAAGCAAGAAATATTTTGCAAGAATCATGTCTGTCCCTTCTCCAAAGTGATCACTTTCTATAGAAAAGGTCATTTTGTGCTGGAAACCTTTTACACAGACCCACATTTGCTGCCCTGTCCTGAATCAAATATAGGTCAGTTTACTGTGCAGAACATCTCCCCACAGGCTGATGGGGAGAAGGTCAAAGTGAAGGTTAAAGTGCGCGTGAACGCACACGGGATTGTGAGTGTGTCCTCTGCATCGATGGTTCAGAGAGTTCAAGTTGAGGACAATGAGGCTATGTTTATGGATGATTTGCAAGAGAATGCCAATACTCAAGAAAGTACAGAGATCATGAACACAGAAAATGAGATGCAAGACAAAAGTGAGGGCGAAACACAGCCCCACATACAGATAGACAAACAAGAAGCACAACAGTCTCCCCCTTCACCTGACACTCGTGATGAGTGTCAAAGCGATGTTAACCCTCAGAAACTGAATGGAGAACTCCCAACACACCACCCCCCTGATGCCAAGAAGCCCAAGATAAAGGTGAAACATGTGGAACTGCCCATTGAGGCTAAGCTAGTGTGGCACCTGGGAGAGGATCAGCTGAACACATACATTGAACAAGAGGGTAAGATGGTAATGCAGGACCAGCTAGAGAGGGAACGAAGCAATGCAAAAAATGCAGTGGAGGaatatgtgtattatttcaGGCACAAACTTGCTGGACCCTACGAAACCTTTGTAAACGAAGAGGAACGAATCCAAATCACAGAGCTTCTGGACCAGACCGAAAACTGGCTGTATGATGAAGGGGAGGACCAGCCCAAACAAGTGTACATTGACAAGATGCAAGAACTTCAAAAACATGGCCTGCCTGTAGAAGAAAGATACCAGGAAGCTGAGATGAGGGACAAGCTGTTTGCAGAGGTGACCTccaaagtgcaaaattacatgAAGATAACAGAAGATTACGGGAATGGGGATGAGAAGTACATTCACATTGATGTGCCTGACATGGAGAAAGTCACAAAATGTGTCCAGGAGACGATGGAGTGGGTGAACAATGCAAGGATGGCCCAGGACAAACTGCGACCTCATCAAGAGCCAGTGGTGCGCGTGGCCCAGATCAGAGCCAAACTTCAGGAGTTGGATAGTACCTGCGAGCCTGTTGTTTCAAAGCCGAAACCCAGAGTGGAGTCCCCCGTTGAGGACAACATGCAGACTGAAGACAACCCCAGCAGCAAGACAAAAGCCCAAGCACTTGAAAAGGATGTTATCACCCCAGAGGAAATTCAACAAAATGGGGAAAATGGATCCACAAATATGGATCTCAATTagaataaagtttttttttttttttttttacttggatGTAAAGTCTTACAATTAGTAAAGATGAATAGCCTGACAGcagggggggttgggggggcttGCTTTGATTgaacttactttttttttggacTGAAGGCTATTTCAAAACAGGAGTACTTTCTGTTGCACTATAGGAAGCCTTGCAATTTACCAGTCTCTTTGCTATATAGTGATCTGTTATTACATTACTTTGTAGTCCAgtgaaaagcagttttgtttctttgtggttAGGTTTTCTTTTGATAATCAAGTTGCAAGATTATACCTTCTGACTCAAATATAGGTGTTTTCAAAGGGAAGCCAGAACTCagaatgtgtatataaaatTCCTGTGGAATTATAAATGCCAATTGTCATTAGGTGCCGCATGAAGAAAGCAATCTGTAATTTGCTCAAGTAAGTGTCTCTAAAGCCTTGCACAAATGCTCATAATGGCATGTTGGGTTTTTTCTATGTTTCTCACTCCATTTCCAAATAAACTTGTTGGCTTACATTTTTATCCGATAAATCTGTTAAGACTGCTAAGACTCATTACAACTTTCCAAAGAATGGATGGTGATCGCTCTGGCAGGAAACATTGTATCACCCGTTACAATAGACTGCACAGTTCAAATACCCTTAAAAAATCAAACTATTTTGTCATCCCACCCCATTATACTTTAAGGACCTTATTTTAAACTGAACAGTTTTCTGCTTTGGTTTAATTATTGTGGAAATTAAAAGTACTCAATACAAATA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14315 lncRNA upstream 62743 9330891 ~ 9333859 (+) True G11572
TU14313 lncRNA upstream 82168 9313998 ~ 9314434 (+) True G11570
TU14244 lncRNA upstream 292420 9103625 ~ 9104182 (+) True G11511
TU14243 lncRNA upstream 295286 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 298675 9097269 ~ 9097927 (+) True G11508
TU14444 lncRNA downstream 557922 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 562500 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 602997 10009039 ~ 10009385 (+) True G11678
TU14453 lncRNA downstream 691656 10097698 ~ 10098122 (+) True G11681
TU14456 lncRNA downstream 729886 10135928 ~ 10136190 (+) True G11684
AMCG00016143 mRNA upstream 109727 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016140 mRNA upstream 277164 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016136 mRNA upstream 307569 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016135 mRNA upstream 417697 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 587567 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016156 mRNA downstream 88420 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 103982 9510024 ~ 9521955 (+) True AMCG00016157
AMCG00016158 mRNA downstream 126060 9532102 ~ 9550216 (+) True AMCG00016158
AMCG00016159 mRNA downstream 178321 9584363 ~ 9591639 (+) False AMCG00016159
AMCG00016160 mRNA downstream 251548 9657590 ~ 9658570 (+) True AMCG00016160
TU14288 other upstream 170357 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 296566 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 324580 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2731054 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2734934 6654712 ~ 6661668 (+) True AMCG00016079
TU14381 other downstream 153422 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 192773 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2462783 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 3372182 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 4215837 13621879 ~ 13627711 (+) True G12348

Expression Profile