RNA id: AMCG00016146


Basic Information

Item Value
RNA id AMCG00016146
length 1833
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00016146
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9461493 ~ 9464391 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGTACATGGTTAGATTGACGTGAAGGAAGCACTGCAGAACTGGGCAAATGAAACGGGGTTTGAAATGTGTGTTGATGGCCGGAGATTCAAACCAGCCTGGACGAACACCTGCTTCATGCTGAAATGCCACTCTGACGCCCTCTTCGACTTCCCATTTTGGCTTGGCTTCAGCAACCACAAGTTCAAGCTTCTTGGAATGGGTTCTCGCCTCACCTGTGGGCATAAAGGAGAGGAGATCGCAGAGAAAGCAGGTCTTTTGACTTCCTCCAACCTAGCAGTGCACAAGAACATTAAAGACTCTCCCAGCGGATTGGCTGATTTTAGACTGCTTTCTTGAACAAAAACCACTGTTTGTCAGTTATGTTTTACAGCATGGGTGCCCACTTCAGAAACATGCATTAGTTAGCACCTGCTTCCAACCTGCCAGCTGCTGCCAGCCTATATATTCAAGAGGTTTAAAGGATCGTTTGGACTGGGCTTAACCTTTAACACAAAGGTAGTTTTTCAAACAAGGCTCCTAGCCAAGCAATCCCTTTCTGTCTCCCTGATCTTATGCGTCTATATCGGGAATCTCTTGCTGTTATCCTGGAGATCTGTGGTGCATTCTGGTTATTATTCCAGCTTTTCAAAATCTCTCTCCATGGATTTTTTAAaggtgtatattttttaatcaaaccacTCCTGTTCTTCTACTACCCTCTGCTGGTCAAATAGGGCAATAAACAGCTCCCCTGTGGTTGTAATCTACGACCAAGTTCTCTCAATGTTGGCAGCTAAAATGAAACTGCTTGAAATGTTGCACTAGGACATCACGTATGGATCAAATGAGAGTTGGATGCCATTATTCTACTGTGTGCTTGTTTGAAAATAGATTGAATAACTTGTTGAAGTCTCTTGAAACTGTACAGCACATTTAGAACATATGCttcatataaataatgtgtGGTTCAGTTGGCTCAAACCACAATCAGTCTCACATCTGCAGCAACAGCTGTATTGAAGCCCAATCAATTGCACTCTCATTCAGCTTCATCATAATAGAAGAACCACCGTTGTATTGCTCCATATTGACCAGCAGACCCCAGCAGTGCCAGGGTTGGGGGGTAGAGTGGTTtggctttttaaatgtcattttaaagtatgtttaTCTGTaacctgttttctgtttttgcctTAACTGTCATCCATTATATTTGTCTAAACCTCTTTTACAACTTTTTGAGCATTTGCGTTTAAGAGGGCACTGATAATAAGAAACGGACACTTCCTGCTGATGGTCATTTTcgagaaaatgttaaaagaaatCAGATGAATGTGTTGTTCCTCTGTTTCATGTCTGACCAGAGCGACTTGTTTAACCACAAGGTGGCGATGTTTGATTAATGTGGTGTCATTGTTCGGACAGAAACATGTACCTCGTTTTGATTGGGCCTGCTTAGAGATTACTACTTATTTAAGGCTATTGTTTCCACATGCTTTACCAAAACAACTATTTTGTGAATACaatggtgaaaataaatgttgggCTGTATATGCTATTGGATAAATAGCTTGGGTTAAGTAAGGAcatgccatgttttattttatttatttatttatttattttattaatttaacttgcaAATATAAAGTGAGCAGCTGTACAAAGTTTTTGCTCACACAATCAGTCTGGCAACAGCTACAGGCTCGCCTCCATGCTTAGGAAGCTCTGTaatcactatatattttttatcctATTAAGGGCCTAGTTATTGCGGTCATTTATTAGTGGATCTGTGTTGTGGCTCTGCCCTCATAGTGCACCACTATATATCCACTGTTGTACAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14314 lncRNA downstream 147046 9314000 ~ 9314447 (-) True G11571
TU14210 lncRNA downstream 402393 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 633733 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 1129690 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 1140451 8320697 ~ 8321042 (-) True G11345
TU14398 lncRNA upstream 31800 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 31800 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 79117 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 125344 9589735 ~ 9594953 (-) True G11658
TU14434 lncRNA upstream 231382 9695773 ~ 9696054 (-) True G11662
AMCG00016153 mRNA downstream 4948 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016149 mRNA downstream 19754 9432630 ~ 9441739 (-) True AMCG00016149
AMCG00016154 mRNA downstream 34249 9420129 ~ 9427244 (-) True AMCG00016154
AMCG00016155 mRNA downstream 44768 9416522 ~ 9416725 (-) True AMCG00016155
AMCG00016152 mRNA downstream 50926 9406302 ~ 9410567 (-) True AMCG00016152
AMCG00016150 mRNA upstream 3955 9468346 ~ 9475518 (-) True AMCG00016150
AMCG00016147 mRNA upstream 14399 9478790 ~ 9489618 (-) True AMCG00016147
AMCG00016162 mRNA upstream 211547 9675938 ~ 9683998 (-) True AMCG00016162
AMCG00016161 mRNA upstream 219775 9684166 ~ 9685154 (-) True AMCG00016161
AMCG00016166 mRNA upstream 242880 9707271 ~ 9711998 (-) True AMCG00016166
TU14024 other downstream 1267061 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5541069 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5922300 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6426310 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6750808 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1382443 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1382540 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2858770 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3397708 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3397708 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile