RNA id: AMCG00016147


Basic Information

Item Value
RNA id AMCG00016147
length 5789
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00016147
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9478790 ~ 9489618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGAAGTTAATAGAGGTGGCACCGCCGGATATAGCAGTTAATAGAGGCAGCACCGCCGGATATGGGACGTCGGTAAAACGAAAAAGAGAAACGGCACATGGGGTATGCTGTAAAACATAATCGGCTTAAAGAAATTAGTGAATTGTCTCATAGAATCTGGTTTTTACGCAGATCTTTACATTAACATATGACGAAGGAATCCAGGCTGCATAAATGGGTAAGTATTGTTTGGATGGATTTCATTCCGGGAAAAACCTTTATGTGGATTTACCACACGCGTGATCTGAGGGTAGTTTCTTGAAGTGTGATACAGATCAAGTGCATATTCATGAAAAGATCAAAACCTGTATACATGTTGTTAAGCAGCATCAGTGTGACCTGTAATCCAGCCCAAATCTTTTTAGAGATGTCATTGTTCTACATTAAACTGTTCTACATGTTTCCCTCAAGTAATGGAGACTGCACTTTGTGCCTGACCGCTGCTGTGTCTTTGCTGGGGTGGTGGTATccataattcatattttctaaTTGTGTTAGGGGTATTCCTTTCTTGGTTGCCTTGAAATGAATTGAGTCTCTTCCAGTGCTTGGCACAGTCAACTGACAATGTAAGTTCTAGACAAACAGTAAGTACAGCAAAGCCTTTAACACCAGTGTGATTCATTGGGTTTTGGCCAAAGGTaaaaattggtttattttatttaatgacgTATTTGTACAGAGAGAGCCTTTCTGCAGACTGTTTAACAACATAACTTTTCAAAGAACGTGTTCATATTAAGAACATGGACACTCAACTGGAAGCATacgtttttaatttttaattttggtataACTTTCACTTTGCACAAACCTACAGTGCAgctgtttttgtaaaatgactgtaataatattttgtttattttgttgtttgtttccacAAAGTTAGTGATGTCTAcagttaaaacacattttaaaatgcttatcatGACAACCCTAACCTCcaaaagaaaagggggggggggatattgGCCAAATCAGCATAAAATGTTCTctcttgatttaatacaattgtatttccttttcctATTGAGTTAAAATAATGAGTGCCTAGGCCTCACACTAATTTGTGAAACATTTCCATAGTCAATCCACTCCTATAACCCAAGTAAGGGAATATACTGAAATActacaaaacatttccatataATGAACTAAGAGTTTTCAATACTGAAAAAGCATAGGTATAGGGAGAGAATGCAGGGGAAGAACAGAAAAGCACTCTGATTGCTAATACATCATGTAGGATTGATTAGCAAAGGAGAATGATATGACCTAATTGAAATATAATAGAGTATCGATTTAACATTGAGTGTCTGGATGTAAAAGTTGTCGTGatctttcttttgtcttttagtGTGTGCGGAGGTGAGCCTGATTCCAGTGATATGGTAATATTTAACAAATGGCTGGAGAATGCAACGTTCAAGAGGAGCAGCAGTAATTTACCAATGAGTGGTGAAGGCACTGGTATAGGGGTATCCACCCCACCAATGGCGGGGTCTTTGGGAAAATCTCAAGAGAGGTTTCCGCTGGACAAGAGCTGTCCAGTGTGCGCTGCCAAAGGTCAGACCCAGGCCCTGCGAGTCTACCGCATCAGCTTTCAGGAGTCTATCATCCTCTGTGGAAACCCACAGtgcaTATTTCCTTTGGGAAGCAAGCCACTTGCTGAAGTTCTCGTACCTGGCACCCCTGGAAAGGTTCTGCCTAAACGCAATTGGGCAAAGAGGAAAAGATTGTGTACCAGCCTTGAAAAAATCCAGGCAGAACTTCCGTCAAAGTGCCAGAGGACAGAAGATCCTGTCAGCAAGGAGGAGGACGTGTCTGCCGGTGGTGAGGTGCAAGAACCTCGTTCTGTGGATTTGAGCCATCAAGAAAGCTCTATGGTTACCTTAGTAACAGAGAGTGAAAACAAAGAGGAAACGACAGCCCCATCACAGCCAGAAGGAGTAGATGTGATTGAGGAATTGGCTCATACCACTGATCTCTGCAGCCTTGGTAAAGACACTGAAAGACCCTGCTCTGTGCAAAGTAACCTTGATGTCAAGTCCGGTGCACTACAGGAAGCAGACTCGGGACAGCTGGTTCCtgctcctctctgtctcttctgGAAGAATCGGCATTCTCTTTGCTGGTTGGATTCACTCATGGTGGCTTTGGTACACTCCAGTGCTTTGAAggagggtgtgaatactttacACACCGAGAACTCGCCAGTTAGAAAGCTATGGACGGAATACCATAAGGCGTGTGCACTTTTAAAGGGGGCACCGCAAACTGACAATCAAGAGGATGCGAATAAAATCCCTTCAGCAGTCTTTCTCCAAGCACAGACACTCCTGGACGACATCcgaatgtttgttttcaaccttCTGCAACCTATGCTGCGCTGCAAACTGGGAGCGAAGGAGAGCCCAGTGTTCGCGCTGCCCCTCTTATTGAAGCAGGACGAGCCGGCAGAGGAGCTGTTCAGACACTCCTTCCATTGGGAGTTTGAGTGCTCCTCCTGTGGGCACACCCTAAAGAACAGGTGTGAGAAGACTTTAACTACGTTCACGGATATTGTGCCAGAATGGCACCCCTTAAACGCTGTTCATCGATCCCAGTGCAATAAGTGCCAACAGAAACTTCAGCAGCGGAGGATGGTTTTGGAAAGgttACACCCCATTTTCATGCTGCATTTCGTTGAAGGGCTCCCACAGAACGATTTAAATGCTTATGCATTTGACTTCCAAGGGAAACACTACGCGGTTTGCACTGTGATCCAGTACGATGAAAGCCTGAAGCATTTCGCAACGTGGCTCCGTCAAGACGATGGGTCATGGCTGGAATGCGATGATTTAAAATATCCCCATTGCGCCGTTCACAAGCAGCTGGAAGTTCCTGCCCATGAAATCCACATTGTCTTCTGGGAAGCTCAGGAAAAGAGCACTGAGCCGGAGACTGACCTCTGTCTGAGAGAAGACTGCGTTGAGAGAGATGGATGCACTAAAACGGACCAGCAAAAAATCTCCCTGCTGGTTCCCGAGACGGATCTCTTCAATGTGACTTCAGATGTGAAGAGTGCTGATCTTTCAGCTGATTGCAGCTTTAATAATTCAATAGGAAGTGATGAGTTGTTGGACACCTTTGAGGGTCTGTCACACAATGATATCGTCACCCTGACCCTTGTTGAGATCAAGGTTGAAACAGAGGGGCAGGCGCTGGACAGATGCCAAATTCCTGACTCTTTGGAAGGCAGTGACCAAATTGAGCCACCTGAAGAAATCCTGCCCGCTCAGCCTTCTAGTGAAAACTGTCTTCTGGGAGCTAGTGGGAATGGATCTCTTTCTCCAGACATGAACCATGGAATTGAAATGCCTTCCGGTCTCGGCCGTCCTGAAGAACCTGCAAAAGTGTGTGTATCACAGCCAGGGATGTCAAAAGGGAGCGAAGCTGTTTTGCCTGGTCCCCTGAAGACTGGGAAGGAAAAAAGAGGTTCAGTTGACTATAAGAGAAGAGTCATGGCAGCCGTCAAGAGCCCTCCGCCACTGATGGTTAACAGTGCACTTTCTCCAGACACCACTTTACCTCCTTCACCGTCTTTGGCACTCAGTGGCAACATCACAGTTGCTGTTTCGTCCACTCAGAGTGCTTCTGTTCTGTCCTCGGCTGTGAGTGGAATCAAAACCAGGGCCTCTGGAGGCAGATGGGCAGCTAATTTGCTGAACAGGCACCCATCCTTACAAGCAAGCGCAGCCCACCTCAGGCATGCCTCCGGGGCGCCTTCTAGTCACTCTCCAGGGACCCTGAACAAGGAAAAGCAGGGTACCAAAACCCCCTTGGCACTTGCGGATGATGCGTCTTTCTTGGGCAAGGCAGCAGAAATGTTTGGGGGATTTATGTCAAAAGGCCGTGCAAGCACAGTTGTGGCATCTTCAAAGGGTAATTTAATCTCTCAAGGTATGGAATCAAAAACTCAAGATGTCTTCAAGGAGGAATGTGTAAAATCTCCTTCCCTGCAAGCTACGTTTTTATCCAAACCCGTTAATACAATAGGTGCCTTACACCCTACTTTAGGCGCTGCTACTCTGGGCCACGACACACCGCAAGAACCAAGCAAGACTTCAGCACTTAAAGGTTTGGATAAATCTGAGAAACTCCGTCATAAACTCTTGAAAAAGCTCAAGGCTAAAAAGGAGAAGCTTGCATCCCTCAACAACTTACTGAAATTAGAAGGGGGTGGGAAAGGAGATGTCTTCAGACTTCCGGAAAGCAGAGAATCCTCCAAATATTTAGACGTCAAGAATGTCTTGCCAACCCCGGACAGCACAGATACCGAGTCGCCCTACACCGTTAGCTCCAGCACTTCGTTTTGTAGCAGTCCCAGTTACGATGAATTCTTCGCTGACCTCTTATCTCCTGCTACAACCACGAGCTCGGCGTCCCCAGACAGCACCGGTTTGCTGGAGATGCTGGTAAACGGACAGGAGACAGGAGGACTTCCCAATGGAGCTGCCGTGGACCACAGTGGCTCTCAGGGCGGCACTGCTGTACAGCCTCAGGTTATCGGCTCGGTGACGATACAAGAAAACGGCTTGATTTCGGCAAAGGAAGATTTCTTCAGTGAGTTAATGTCTAGCTCAACACTTGCAGAGAGCACAGATTTTAACATGCTTGACCTTTCCACCTTTTCTTTTGattagttgttttttccattgttgTGGAGTTAAAAAATGGCACTGTACAGAGTTTGCTTATTGAAAGTAATCATTACTTGAATGCTAAATtggctagtgtgtgtgtgtgtatgacttttttgtaataaaactgttaaaaacagtATATTTCTAGCTGATCAACTGCTAGTGTTTAGTAGTTGCTGtgttttacataatataaactGCTTTAGAATTCCTGTTccttttttgcacatttttgaaACATAATGAAATTATTAACTTTTCAAATTACATGATCAATCACTCAAGTAACACTCGGCTCTCCAGATAATAAAGATAACTTAGGTTTCATATAATTCCCTCCTTCATTTAATCAATATGAATGATTGATGTATAAATGAGGAGCACCAAACCAACATCAAacttttgcagaaaatgactGCTCCGTATATGGATTTAAATAAGATACAGGGAAGGTGTGACTGCTTTTTGACCTGTTCAGAACAAACCAGTACATGTCGAGGGATAGAGAAAGTTAGTGAAAATATGCATTAAGAATGACTGAAGGTTTGCCACAATTTTTGTAGGGCAGGTGTGTCAGACATATACTGTAATCTCACAAATTATTCATAAGAAAATAGTGATTTTGGATGTCTGGTCCAGTTTTGTATTTCAACTCAAGGAAAGTTAACTACTTAAATGATACAGACATCTAAAGGTTAATTATATAGTTCAGAAAATGGCTAAAACAAGTCTCTTCTGGTGATAAGCAGGGGGTACTGTGCAGTCTgctttattcaaattaattctcCCTTATAACTGTAATTCATATGGAGCCATTTTTTTCAACCAGCCTCTACTAACATCCACTACCAGGCCTTCAGCTCTCTCCAGTTGTAGCAGGgggttcaattaatcaattacttcAAAAAGAGTGATTGCATGCCTCTGTAATGAGGTTCGTTTagttaaactgtttattttaaaaccttgttTTAAAGGTATGTTTTGCAGGAAATAGCTGCTGAAACCATATGTTCAACAAAGTTTAcctttttgtaatatgtaaataaaacattaattgaaa

Function

GO: NA

KEGG:

id description
K23008 USPL1; SUMO-specific isopeptidase USPL1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14314 lncRNA downstream 164343 9314000 ~ 9314447 (-) True G11571
TU14210 lncRNA downstream 419690 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 651030 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 1146987 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 1157748 8320697 ~ 8321042 (-) True G11345
TU14398 lncRNA upstream 6573 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 6573 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 53890 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 100117 9589735 ~ 9594953 (-) True G11658
TU14434 lncRNA upstream 206155 9695773 ~ 9696054 (-) True G11662
AMCG00016150 mRNA downstream 3272 9468346 ~ 9475518 (-) True AMCG00016150
AMCG00016146 mRNA downstream 14399 9461493 ~ 9464391 (-) True AMCG00016146
AMCG00016153 mRNA downstream 22245 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016149 mRNA downstream 37051 9432630 ~ 9441739 (-) True AMCG00016149
AMCG00016154 mRNA downstream 51546 9420129 ~ 9427244 (-) True AMCG00016154
AMCG00016162 mRNA upstream 186320 9675938 ~ 9683998 (-) True AMCG00016162
AMCG00016161 mRNA upstream 194548 9684166 ~ 9685154 (-) True AMCG00016161
AMCG00016166 mRNA upstream 217653 9707271 ~ 9711998 (-) True AMCG00016166
AMCG00016164 mRNA upstream 222515 9712133 ~ 9713118 (-) True AMCG00016164
AMCG00016165 mRNA upstream 277597 9767215 ~ 9767922 (-) True AMCG00016165
TU14024 other downstream 1284358 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5558366 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5939597 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6443607 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6768105 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1357216 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1357313 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2833543 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3372481 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3372481 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile