RNA id: AMCG00016148


Basic Information

Item Value
RNA id AMCG00016148
length 5292
RNA type mRNA
GC content 0.41
exon number 13
gene id AMCG00016148
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9267201 ~ 9289324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttggttcctcTAGTTACAATGGAGGGGAGCATCCCAGGTATTGCTGACTGCCCAATGGGACATTTCCCCTGTGGGAATCTTACAGTGTGTTTACCTCAGCTCTTGCACTGCAATGGTGTGGAAGACTGTGATAATGGCGCTGATGAAGAGAACTGTGgAGATAACAGTGGGTGGGCTGACTTTTTCGACCGTGCAGTCGGAAAACCATACCGCCAAAGCTTTCCCAAGGATtgttttcTACAGCAATACCCTGATTTTTGTGAATGCATCGAGACAGAACTAGAATGTGTGCAAGTCAACCTGAACACCGTACCTCTGGTTTCAACTAATGTGACTTTATTATCCCTGAAGAACAATGAAATAAGAAAGCTTCCTGATGCTGTTTTTTCAAAGTACTCTGAACTTCAGAAACTattCCTTCAAAATAACAGCATCCGAACAGTGTCAAGTAGAGCTTTCAGTGGACTtcacaaactgaaaaaactGTCTCTCAGTCAAAACTGTATCACATCATTGAAGCCTGGTGTTTTTAGTGATCTTCATCAATTACAATGGCTAATCCTTGATGATAACCCACTCAAGAGGATTTCAGCACAAATGTTTACAGGGTTaaagtccttgttttttttgtaagtacAATGCAGGAGGCCCACGTTTTCAAATGAACTTCCCTGGCTTTTACTCATCCAGTGAGGGGTGGTGGTGTGTATCGATGTCTTGCGATGAGCTTTCATCCAGTAGTGGCCAGTCAGAGCTTGGCAATTATGTTCTATAATTGTACTTTTGAATACGGCATTGGGGGCAGGGGGGGACCTTTTGAATCTATGTGTCTATTGCTACTGTCATTCTAGCATCTAGCAATGATGATTGCTGATGCATGATTCTGTATGAGGGGCTGTTCAATTAAcacataacaaattaaatgtattatataccaaagtggatatatcatatagcagaacaTATGTATTAGGAACCAAAGTGGATATAACTTacagcacaaaaaataaagttatttgcAATGTGTTAAATAAACTTTGTTATATGAGTTTGGCTATATTTTCTGCTATGCGATATATCCACTGTGTATATGATTTATAGGTTTTGGCATATGATACATCTACTTTggtacataaaacatttaatttgttatttttgaagtgAACGGCCCCCCATAATTCtaattgttttcacagcacAAGCCATCATTGTtcctttatattatattatcttTAAGCAGTTCAAAACCATAACCGTTCTGCATGAGCCAAGTTCCAACGCATCCTCATAATCTTGGTCCTGATCCCTGACACTTTCCCGGCACAATCAGTTTACCGCACCATTCTGAAAGTCGTAATGTTTCGcaatcaaaattaaacattaaaatgcccGTAGGAAATCTTCAACTGGGACACTGAAAAGTTTGTGAGACATTGTACGActtcatgttcttatgttctttcaaggagaagaaaaacaaaaaagcaaatgcacatttttttaaaaatttttttttttatgaataaggCACAAACTGACTGCAGTTacttttataatgttttcacaaatatgtatttccttaTCCCCCATCATCATCGTGTTCCTTCTTCGATGTCATTTCACGCCAGATTGTAAGATTTGTAGGTACATTCTTGATAGTTCTGATTGTTCCATGTGGTGATGTTATCCTCCCATTGGCATCTGGGTAATCCTCTACTCCTTTTACCTTCAGTTTTACCTTCTAAGAGGCATCGTTGGAAGTTGCTCCTTCTTGTTAAATAGCTGTTCTTGCACGTCTTGATATTTATTAGTAGTGGCTAGTTTTCATCAAATCTAATACCTTTTCGTTTTGACAATTTTCTGGTCCAGGAAATTTTGTGCATCATTTGTCCAGGTTTTGCTTAAGTAGTTTAGTGTGGAGTGTCCATAGCAATGAAGTATTCTTCATCTGCTTGTGATCGTCAATATCTTTGAAGTCAAGGTGTCATACATGTTGTGAAATGCGCTTTGTCCTATTCTTCCCTcaatttctttcacattttccGTCATCAGATTTACATCTCTTTATGTCTAAATATCTTTCTACTATTGTTTTTAGGTTCAGGATGACTTTTCCCCTCACGAAACCACTCTGAGTTTCCCTTATTTCAGCCTCTATTGTTGGTCCTCATCCCAGTGTCTTAAAAAAGTCCTGCACCATGATCAGTTTTCAGAACTAGAACAACTTTTAACTCCAATTTATTATACCTGCAAtctgttttctttggtttttatttttaagaaaattacCTCCTCCcctcaaaattaaattaaattaaaaaatctaagGTTTGTTCTCCACATTGGATCTGTAttggttttcattaatttcttccttttgtttctgttatttgtacATCAAATACAAGATCATTTGTCACTTTCtgattctttccttttttgcctttttctgGCATTTTTTGTGGCAGTTTGGTGTGATATTTTCTTGTGCCCACTTGTCTCGTTTCATCCCTTTGTCTGGTTTTCCTCTCATCAGGCTGTCACGCTGGTTTCTCCAATTTTTGGCGAGGTAATTCCCGCATGTGATATTTTTCACAGCTGTACAATTCATCACAGACAACCGTGTAGAGGGGGAAATGAGAACATTTTGTGCAGGGCCACAATTGTCTTAATTATTCCAGAACAAACCTAACATCAGCTGTAGCTTTGTTACCCCATCTCTAAGGACTTCTGAGACTTTGGTTTGCATTAATTAGGCTTAAGAgctccattttaaaacatgtaaacaatgaCATTTACTTACTCTACTGAGATGCATAACTATTTAGTTTCATACGAGCTCCACTTaacaaagttaatttatttgtttaccgTCAGTATTTGCAGCTGCAATTACAGGTCAATGACAACACAGTTGTTCTCAGTTTTAGAAGTGAAATTGTAAACGCTTTGAATGCtctgatttgtgtttgtattttgtagatTGCTATTGCACTGATATGGTGGCTTAAGACATGGAAGTTGGGATGCTGTGTGTCATCAGCAGGAATTGTTGTTAAGGATAATACAAGCTTGGCCATCTGGTTGAGTATGAGAGCATAAACTGTTAGTTATTGCTTAGTCTGTTCCGACTGTTTTATAAACTCTGTTTTATAATGAGGCAAAATCCACTAGCACTGATGCTTCTAACAGACACTtagcttgtttaaatgttttaatgtgggTTTATGTTATTCACAATTGGAGGTTTTTGCAGATTTATGACTGACTGgagttttcattgctttttcaGGTCAATGGTTAATGACTCTTTGGAGCAGCTTCCAAAGGCAAAACTGTGCTCTGAGATGCTGCTTCTGAACTGGGTGGACTTCGAAGGGAACAATATCAGGGCGTTAAATTTCTCCACCCTACTGACGTGCAGTGACCTCACTGTTCTAGGACTGGAGGGAATAGAAATCCCAAATATACAAACCAGGATGTTCAAGCCCGTCAGGAACCTTTCGCATATATATTTTAAGAAGTTTCAATACTGCTCCTATGCTCCTCATGTACGGAAGTGCAAGCCCAATTCCGACGGGATTTCTTCCTTCGAGGACCTGCTGGCCAACATTATCCTCCGAGTGTCAGTGTGGGTCATTGCTTTCATCACTTGCTTCGGCAATGTCTTTGTTATCTGCATGAGGTCCCTGATCCGAGCGGAGAACAACCTGCATGCCATGAGCATCAAGGTGCTGTGCTGTGCTGACTGCTTGATGGGAGTGTACCTCTTCTTCGTGGGGGTGTTTGATGTGAAGTTCCGGggtgaatacaataaaaacgcACAGCTCTGGATGGAGAGCATGCAGTGTCGCACCATAGGCTTCTTGGCTATGCTCTCTTCAGAGGTGTCAGTGATGCTGCTGACCTACCTCACCCTGGAGAAGTACCTTGTCATTGTTTTCCCGTTCAAGAACATTCGCCCGAGCAAATGTCAGACTCTGGTAATGCTGGCGACCATATGGCTGCTCGGATTTTTCATTGCCGCCATCCCGCTGTTGAATGAGGATCTGTTTGGGAACTATTATGGCCGAAATGGGGTCTGCTTTCCTCTCCATTCAGATCGTCTGGAAAAACCAGCTGCAAAGGGGTATTCAACAGGAATATTCCTGGGGCTGAATCTGGTAGCCTTCCTCATCATAGTCTTTGCCTACACAAGCATGTTCTGCTCCATCTATAAGACCGGCCTGAACACCACGGACATGAGGAGTCGCCTCCACAAAGACGTTGCTGTGGCCAACCGGTTCTTTTTCATTGTGTTCTCTGATGCCCTCTGCTGGATACCCATTTTCCTCGTGAAAATCCTCTCTCTGCTGGAGATGGAGATTCCAGGGACCATAACTTCCTGGGTGGTGATCTTCATTCTACCCATCAACAGTGCCTTGAACCCCATCCTCTACACTCTCACCACCCGCTTCTTCAGGGAGCAAGTGGAGCTTTTACTGTGCAGGTGGCAAAGAAACTCCGGCCACGAGAAGGGCCGAAAGAGTCTGACCACTTCAGTGGCATTCATGGACTCCTCCAGACAGACCTGCTACCACCAGAGTTTCCTGCAGAGGATATCTATCAGGGAGATGTGATGAAAGGGGATAACAGGAAGTGAAGCAACAAGAAAGAGCAATACTTTCAGCCATTTGGCTAATTCTGTTCAGAGGGTCTTCATTCCCATCATGCCACTGGATTACCAAGGCAACGAGCCTAGTCTGTTAAGGGCTTTTTCTCCATTGGACTCAGGAGCAGCCAATAATGAAGACCTTTGCCATACAGTAACGGTCCTCTccactacagggagacagggcgTCAGTGCACTATATGTGTATAAAGTGTCTGAACAGGTTCGATTTCAGCATAGCTGGGACTCCTCGACACCAAGCACAGTATTGTTTACAGGAGCAGTTCTCCATGCAATGGACTGAATGTgactttattgtttattgtacagTCGGAGAAAGCCTAAATCCACGAGTGGGGCACACTTCattgaatggaaataaaaaaaaaaaacgttttaattGCCAAAACCAAATTTGTGGAGAAGCtaattttccttccttggacagaAAGAATATGTAAGATTTGGTTGTTACTGTGAATGATGTTTATACCATAATTTcattatctatttaaaaaaaatcctcacCAGCAAAATGGCTACTTATGTCAACATTCCACTCAAGTCCAGTGAAATCATGTGATTCTGATCTTTTAATCCTTTAGAAAATGCTAAACACATAGgttattataattgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14210 lncRNA downstream 208101 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 439441 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 935398 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 946159 8320697 ~ 8321042 (-) True G11345
TU14025 lncRNA downstream 1072769 8191546 ~ 8194432 (-) True G11326
TU14314 lncRNA upstream 24676 9314000 ~ 9314447 (-) True G11571
TU14397 lncRNA upstream 146478 9435802 ~ 9498753 (-) False G11633
TU14398 lncRNA upstream 206867 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 206867 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 254184 9543508 ~ 9543743 (-) True G11650
AMCG00016144 mRNA downstream 83291 9119568 ~ 9183910 (-) True AMCG00016144
AMCG00016142 mRNA downstream 151047 9111277 ~ 9116154 (-) True AMCG00016142
AMCG00016141 mRNA downstream 156394 9089169 ~ 9110807 (-) True AMCG00016141
AMCG00016139 mRNA downstream 211622 9051060 ~ 9055579 (-) True AMCG00016139
AMCG00016138 mRNA downstream 239360 9002102 ~ 9027841 (-) True AMCG00016138
AMCG00016151 mRNA upstream 44369 9333693 ~ 9358730 (-) True AMCG00016151
AMCG00016152 mRNA upstream 116978 9406302 ~ 9410567 (-) True AMCG00016152
AMCG00016155 mRNA upstream 127198 9416522 ~ 9416725 (-) True AMCG00016155
AMCG00016154 mRNA upstream 130805 9420129 ~ 9427244 (-) True AMCG00016154
AMCG00016149 mRNA upstream 143306 9432630 ~ 9441739 (-) True AMCG00016149
TU14024 other downstream 1072769 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5346777 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5728008 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6232018 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6556516 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1557510 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1557607 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 3033837 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3572775 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3572775 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile