RNA id: AMCG00016149


Basic Information

Item Value
RNA id AMCG00016149
length 1530
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00016149
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9432630 ~ 9441739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCAGTTTTGCACTTACATGCAGCTGGAGTACACCGAGAAAGAGGAGTCTCTCTCTCGAAAGAAATGGGCGTCGTTTGCTCTGCCGGCCACCGTGAAAGAAGTCTGTCATGGTGAGCCCATATTGAGGCTCCGCTGTACCCCCGATGGCACTGTTGTCACAGTCAGGGAGGACGGGGCCATCTACTTCTGGTCTCCGGAGCTGAAATTGAAGAAAAGCAAGACTGTGTTTGAGAGGCCagtaaatagaaaaaacaaatgggtgACTGATTTCATCACAATGCCAGAGTACAACAAGCTGATCCTAGGAACTGGGGACAGGGAGATCCAGATGTATGAACTCTCTTCTTTGGAGCCCTATTGTCAGATCAGTGCACTGCAGACTGTGCCTCTCAGATTAGACTACTGCTCCACTGGCCCTGATGAGTGTATGATTCTGTATGGGGATGCTCAGGGATGCGTGAACATCATATTAATGACATCCGTCGGAGAGACATTGAGAATGTGGAAGAAGCTGCCAAAAGTTGAAAATGTGCCCAATATAGGAATCGACAATGCTGTTCTCTCTCCAAATTTTACATACATTCGCTGGAAGGTACATGAAGACTGGGTGACGCAGGTAAAATATTATGACAACATCCGGGCTGTGATCTCCACATCAAACCAGGAGTCCTCCGCTCTAGTCATAGGCTGCACTGTTCCCACAACTAACATTGAGCAGCAGATGAAAGAGCTAAAGGAAGCTGGTCGAGAAGGGAAGGGGAAGAAGGTTCAGGCCTGTGCAGGGCTGCCTCTGCAGCGAGCTGACTGCGATCAGACCGTCTTCCCCATCTATAAAGGCGTGAAGACTTTTGATTTCTGTAAGAAGCACAACTTAATCGtcactggagggatggacagacTCATCAGGATGTGGAATCCTTATGTGACGGGGAAACCTACTGGCATCCTGAAAGGTCACTGCGCACCTGTCTTTTACCTGTATATCTCCTCAGATGACAACAGGATATTTTCTGTCTCCAATGATAATACTGCTAAGATCTGGGACATTCAAGACCAGTGCTGCCTGTTCACAGCAAACCCCAAAGCCAGTCAAAATGCAGATGTTTCTGCATGTCTTTACTCCCCCGTGGTGAAAACACTCTACATTGCTACGGACTCCATTGCTCTTCTCACCTTGAGGACAAAGCCACAACCCCAGGGTAACCTCACTGTGTCTCATAAAGAGCCAGTCCTGTGCTGTGGCTACAGTAAGGAGTTCCGGCAAGTGGTCAGCTGTACGGAAGGATCTgttgtCAAAGTCTGGGATATCGATACTGGAAACCAAGTCTTCGAGTTTGGTGGTGCCCATGGGTCCTCTGCGATTACGTgcctgacctttgaccttaGTGGCAGAAGGCTTGTCACTGGTGGAAGAGATGGGTGTTTGAAGATCTGGAATTTCAACAATGGCCACTGCTTACGGATTTTAAGGAAGGaacataagaaagatgaAGTCTGTGACTGCACTTATGTTAAAGTCAACAGAAAC

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14314 lncRNA downstream 118183 9314000 ~ 9314447 (-) True G11571
TU14210 lncRNA downstream 373530 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 604870 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 1100827 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 1111588 8320697 ~ 8321042 (-) True G11345
TU14398 lncRNA upstream 54452 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 54452 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 101769 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 147996 9589735 ~ 9594953 (-) True G11658
TU14434 lncRNA upstream 254034 9695773 ~ 9696054 (-) True G11662
AMCG00016154 mRNA downstream 5386 9420129 ~ 9427244 (-) True AMCG00016154
AMCG00016155 mRNA downstream 15905 9416522 ~ 9416725 (-) True AMCG00016155
AMCG00016152 mRNA downstream 22063 9406302 ~ 9410567 (-) True AMCG00016152
AMCG00016151 mRNA downstream 73900 9333693 ~ 9358730 (-) True AMCG00016151
AMCG00016148 mRNA downstream 143306 9267201 ~ 9289324 (-) True AMCG00016148
AMCG00016153 mRNA upstream 11081 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016146 mRNA upstream 19754 9461493 ~ 9464391 (-) True AMCG00016146
AMCG00016150 mRNA upstream 26607 9468346 ~ 9475518 (-) True AMCG00016150
AMCG00016147 mRNA upstream 37051 9478790 ~ 9489618 (-) True AMCG00016147
AMCG00016162 mRNA upstream 234199 9675938 ~ 9683998 (-) True AMCG00016162
TU14024 other downstream 1238198 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5512206 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5893437 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6397447 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6721945 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1405095 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1405192 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2881422 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3420360 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3420360 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile