RNA id: AMCG00016150


Basic Information

Item Value
RNA id AMCG00016150
length 824
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00016150
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9468346 ~ 9475518 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggacagacacagagagggagacgcTTCACTAGTGCTGATCTGACCGATATCCATCATGGAGCTGGATGTCCTGGAGAACACGTTCCTGCTGGTCCTGGTGACACTACTGAGCGTACTGCAAAATGTCTTTTTTGCTCAGAAAGTGGAACAGGAATGCAAAACCCATAACGCAAGGAGCTTTCTTAGACCAGGAACGCCTGCTTTTGAACGTGTTTATTGCGCAAAcCGCAACTGCGCAGATGCCTACCCAACATTCCTTGCAGTGTTTTGGTGTGCTGGACTGTGCTGCAGCCAAGCCCCTGCAGCCTTTGCTGGAATGATGTACTTGTTTGTCAGACAAAAATACTTTGTTGGATACATGGGGGAGACTTCTCAAAGCACTCCAGGATATTTGTTTGGTAAACGCATCATCTCCTTCCTGTTTCTCATGTCGATGGTGGGGATCTTTAATTACTTCCTCATTGAATACTATGGGAGCGACTACAAGGATTACATTCAAACCATCACCAAGGCTGCGTCAGCTCTTCTCCTCATCCCATGAAGGCCCTACTTTTGATATGCTCTTGTTCAGCTTACTTTAGAAAACTGCTCAATTTACGTGGTCATGTTTGTTATTGAATAGAAGCATTGTGAAGCAATAAAGATTAACTTAAATGTTCTTTACTGTGaaagaacatttatttcagatcaAAAACTCTCTTTGACTACATGTAAGTAGTTACTCCATATCCCAGAGGTAAAAGTGCACAGGGCATTTATTAATCACAACATCAGCATGGATTGAGggaattatgtttaaatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006691 leukotriene metabolic process biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
K20735 ALOX5AP, FLAP; arachidonate 5-lipoxygenase-activating protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14314 lncRNA downstream 153899 9314000 ~ 9314447 (-) True G11571
TU14210 lncRNA downstream 409246 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 640586 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 1136543 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 1147304 8320697 ~ 8321042 (-) True G11345
TU14398 lncRNA upstream 20673 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 20673 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 67990 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 114217 9589735 ~ 9594953 (-) True G11658
TU14434 lncRNA upstream 220255 9695773 ~ 9696054 (-) True G11662
AMCG00016146 mRNA downstream 3955 9461493 ~ 9464391 (-) True AMCG00016146
AMCG00016153 mRNA downstream 11801 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016149 mRNA downstream 26607 9432630 ~ 9441739 (-) True AMCG00016149
AMCG00016154 mRNA downstream 41102 9420129 ~ 9427244 (-) True AMCG00016154
AMCG00016155 mRNA downstream 51621 9416522 ~ 9416725 (-) True AMCG00016155
AMCG00016147 mRNA upstream 3272 9478790 ~ 9489618 (-) True AMCG00016147
AMCG00016162 mRNA upstream 200420 9675938 ~ 9683998 (-) True AMCG00016162
AMCG00016161 mRNA upstream 208648 9684166 ~ 9685154 (-) True AMCG00016161
AMCG00016166 mRNA upstream 231753 9707271 ~ 9711998 (-) True AMCG00016166
AMCG00016164 mRNA upstream 236615 9712133 ~ 9713118 (-) True AMCG00016164
TU14024 other downstream 1273914 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5547922 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5929153 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6433163 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6757661 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1371316 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1371413 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2847643 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3386581 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3386581 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile