RNA id: AMCG00016152


Basic Information

Item Value
RNA id AMCG00016152
length 1200
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00016152
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9406302 ~ 9410567 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTCAAATGATGACCTGCCTCTCGTTCAGAAGCCTCAACCTTACTGGCAGGATGACCTGAGGTGTGGCCACAAAGAAGATGTTCTGTGTATCGCTCAGTGCCCTCCATCCCTATTGGCTACCTCAAGCTACGACGGAGAGATCATTGTGTGGAATCTGGTCTCTGGACACCTACACTGTCGCCTGCTCAGCCCCTACCCTCCAGATTGCACAGAAGGTCGTGTTCAAATTCATAAAAATGAAAGCGGAGGCATCGATCGAAGTGTATCAAGCATCGTGTTCATGAAGACACGGGCTCGGAATGTGGAATTCACTGCTTGCCTGCTTTCCAGCGGACCCCAAGGCTATGTCAGTTTCTGGAGTCTGATCAATGGAGGTAAAATATTTGCCACTTTTGAAGCAGGATACAATGAGCGCAAAAGGCCCTTACAGGATGAATGCTTTCAATGCACATTTGTGTTTCAGTCCAGAATGAAAAGCCACATCACTAAAATGGCTGTGACTGTGGATGACAATCTGCTTTATGTTGCCGATCAGTCTGGCTTCATCTATGTTTATGATGTCAAGAACTATGCTATTGTGCCTGAGCAGGAGGCCCCTAAAAATATAAACTACTGGCGGGCACACATCAGCAGTGTCACAAGTTTGGTGATTATAGATGAAGATAAAGTGTTGCTCACCTCCTCGACAGACTGTACAGTGCGACTGTGGAGCATACATGGAGAGTTCATAGgTACATTTGGGCAGCCTGAGGCTTGGAGCATCCATACAATGACTTCTTGGAAGCATCCAATGGTTCCCTATGAAATTTTAGTGGATCCCTTGAGCATGCCAGCTCACCATATCTTGGAAGGAGAGAACAGTGTCCTGGATATTATCAACGCAGGTCAAACTGAGAACAAAGATGCAACTGAAACAAAGTCTGAATTGCACTACAAGCACAAATACCCTCCACTCTGCATCAGTGACAAAGACATCGAAGAAGAAATTAACCAAATGAGTTATCCAGAAGAGCACGGGAAAAGGCTCCGGCATGAAATATTCAAGCACACCAACAAACCACCCAACCATGGAGGTCCAAAGGCATACCACACTTTGAAGTACTTTGAAATAGTCAATGCCCCCACTACCTGCGAGAGGCCTGATCTGTCTGCTGCTGGAATTGACCCCTTCCTGTCTGAATATATGGAAGAGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14314 lncRNA downstream 91855 9314000 ~ 9314447 (-) True G11571
TU14210 lncRNA downstream 347202 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 578542 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 1074499 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 1085260 8320697 ~ 8321042 (-) True G11345
TU14397 lncRNA upstream 25235 9435802 ~ 9498753 (-) False G11633
TU14398 lncRNA upstream 85624 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 85624 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 132941 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 179168 9589735 ~ 9594953 (-) True G11658
AMCG00016151 mRNA downstream 47572 9333693 ~ 9358730 (-) True AMCG00016151
AMCG00016148 mRNA downstream 116978 9267201 ~ 9289324 (-) True AMCG00016148
AMCG00016144 mRNA downstream 222392 9119568 ~ 9183910 (-) True AMCG00016144
AMCG00016142 mRNA downstream 290148 9111277 ~ 9116154 (-) True AMCG00016142
AMCG00016141 mRNA downstream 295495 9089169 ~ 9110807 (-) True AMCG00016141
AMCG00016155 mRNA upstream 5955 9416522 ~ 9416725 (-) True AMCG00016155
AMCG00016154 mRNA upstream 9562 9420129 ~ 9427244 (-) True AMCG00016154
AMCG00016149 mRNA upstream 22063 9432630 ~ 9441739 (-) True AMCG00016149
AMCG00016153 mRNA upstream 42253 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016146 mRNA upstream 50926 9461493 ~ 9464391 (-) True AMCG00016146
TU14024 other downstream 1211870 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5485878 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5867109 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6371119 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6695617 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1436267 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1436364 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2912594 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3451532 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3451532 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile