RNA id: AMCG00016154


Basic Information

Item Value
RNA id AMCG00016154
length 1675
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00016154
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9420129 ~ 9427244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCCTCACAGACCAAGACCGCAGCACAGTCCTGTTAGGTGGGGGGGTGATGGCCACCATGTTCAATGGGAAGTATGCAGAGGGCAGAAATGGTGAGATTTCCTTCCATGGCACCTCCAGAGACACCTTCACGTCTCTCCTGGAATACCTTTACACCGATTCATGCTGTCCAGCTACTGCCCTGCAGGCCATGTCTGTATTGGTCTTTGCGGACATGTACCAGTTGACTCGTTGGCAGCACACTAACCATCTGATCTTCAGTCAGAAAGAGGACCCATACGGAACTTCACCGAGTAGGAGAGACTTCATGGAGCTGGCTTCAGATCAGTGCCCCAGATACCACTGCACATTTGACTGGGACCCTGATCCGAGCGCATTGGCCTCTGCAGTGCATGATGGGCTGGCACACAGGACAGTCCTCTCAGTGCACTCTGAGATGATGGCCACCATGTTCAATGGGAAGTATGCAGAGGCCAGAAGTTGTGAGGTTTCCTTCCATGGGACCTCCAGGGACACCTTCCAGTCTTTCCTGAAATACCTTTACACCGATTCATGCTGTCCAGCTAGTGCCCTGCAGGCCATGTCTGTATTGGTCTTTGCGGAGATGTACCAGTTGACTTGCTTGCAGCACACGTGGGAGGCGTGTAGCATGCCCAGCAGGGAGCTGCTCAACTCCAGCCTAAGAGTGGTCATCCTTCTCAGGAGGGCCACATTTCACAACACATTTCAGTCAGTCTGGTTGCTTCATTTCATCGCCAGTAACCATCAGATCTTCAGTCAGAAAGATTACTTCCTGAACCTCACGGAGGAGAGATTTCGTAGAGCGACACAGGAAGACGTGGTGTGCCCTGCAGGCCATGTTTGGATTGGTCTTTGCGGACATGTACCAGTTGACTCGTTGGCAGCACACGTGGGAGGCGTGTGTACATACCTGCAGAGCATGCCCAGCAGGGAGGTTTTCACCTCCAGCCTAAGAGTGGTCATCCTTCTAAGGAGGGCCATGCTTCACAACACATGCGCTATCCACCTGGCtcctgcatttcatttcatcAACAATAACCATCTGATCTCCAGCCAGAAAGATCACTTCCTGGACCTCACTGAGGAGGAGAGACTTCATGGAGCTAGCTTCATATCAGTGCCCCAGATATTTATGGGATCTTTTGGGAAATGGCCTCCTCACACTCCTTTGTCTAGTAAACAGCTTGGCCTCATGCAAGGGCCGGCACACAGGACAGTCCTCTCGGTGCACTCTGAGGTGATGGCCACCATATTCAATGGGAAGTATGCAGAGGCCAGGAATTGTGAGGTTTCCTTCCATGGGACCTCCAGAGACACCTTCCCATCGTTCCTGGATACCTTTACACCGATTCATGCTGTCCAGCTAGTGCCCTGCAGGCCATCTAGTGCCCTGCAGGCCATGTCTGTATTGGGCTTCGTGGAGATAGCGTTTGTACACATACCTGAAGCAAGCTCGGCAAAGCACCATCAGCTATCCACATGGCTCCTTCATTTCAATGCCAATAACGATGCTATCTTCAGCCAGAAAGACTTGTGGAAACTCACTGACGAGGAGAGACTTCATGGAGCTGCATGGGTGGCCATTGTTGTGGTACATAAGGGAGCTGGTTCAGTTCCAGTGCCATGTTCACTGCTCTGGACTACGCTGTACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14314 lncRNA downstream 105682 9314000 ~ 9314447 (-) True G11571
TU14210 lncRNA downstream 361029 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 592369 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 1088326 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 1099087 8320697 ~ 8321042 (-) True G11345
TU14397 lncRNA upstream 8558 9435802 ~ 9498753 (-) False G11633
TU14398 lncRNA upstream 68947 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 68947 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 116264 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 162491 9589735 ~ 9594953 (-) True G11658
AMCG00016155 mRNA downstream 3404 9416522 ~ 9416725 (-) True AMCG00016155
AMCG00016152 mRNA downstream 9562 9406302 ~ 9410567 (-) True AMCG00016152
AMCG00016151 mRNA downstream 61399 9333693 ~ 9358730 (-) True AMCG00016151
AMCG00016148 mRNA downstream 130805 9267201 ~ 9289324 (-) True AMCG00016148
AMCG00016144 mRNA downstream 236219 9119568 ~ 9183910 (-) True AMCG00016144
AMCG00016149 mRNA upstream 5386 9432630 ~ 9441739 (-) True AMCG00016149
AMCG00016153 mRNA upstream 25576 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016146 mRNA upstream 34249 9461493 ~ 9464391 (-) True AMCG00016146
AMCG00016150 mRNA upstream 41102 9468346 ~ 9475518 (-) True AMCG00016150
AMCG00016147 mRNA upstream 51546 9478790 ~ 9489618 (-) True AMCG00016147
TU14024 other downstream 1225697 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5499705 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5880936 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6384946 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6709444 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1419590 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1419687 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2895917 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3434855 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3434855 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile