Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00016156 |
| length | 1336 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 5 |
| gene id | AMCG00016156 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 9494462 ~ 9498792 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0009409 | response to cold | biological_process |
| GO:0030900 | forebrain development | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| K10802 | HMGB1; high mobility group protein B1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU14315 | lncRNA | upstream | 160603 | 9330891 ~ 9333859 (+) | True | G11572 |
| TU14313 | lncRNA | upstream | 180028 | 9313998 ~ 9314434 (+) | True | G11570 |
| TU14244 | lncRNA | upstream | 390280 | 9103625 ~ 9104182 (+) | True | G11511 |
| TU14243 | lncRNA | upstream | 393146 | 9100911 ~ 9101316 (+) | True | G11510 |
| TU14241 | lncRNA | upstream | 396535 | 9097269 ~ 9097927 (+) | True | G11508 |
| TU14444 | lncRNA | downstream | 465172 | 9963964 ~ 9964237 (+) | True | G11672 |
| TU14446 | lncRNA | downstream | 469750 | 9968542 ~ 9968783 (+) | True | G11674 |
| TU14450 | lncRNA | downstream | 510247 | 10009039 ~ 10009385 (+) | True | G11678 |
| TU14453 | lncRNA | downstream | 598906 | 10097698 ~ 10098122 (+) | True | G11681 |
| TU14456 | lncRNA | downstream | 637136 | 10135928 ~ 10136190 (+) | True | G11684 |
| AMCG00016145 | mRNA | upstream | 88420 | 9396602 ~ 9406042 (+) | True | AMCG00016145 |
| AMCG00016143 | mRNA | upstream | 207587 | 9237700 ~ 9286875 (+) | True | AMCG00016143 |
| AMCG00016140 | mRNA | upstream | 375024 | 9117902 ~ 9119438 (+) | True | AMCG00016140 |
| AMCG00016136 | mRNA | upstream | 405429 | 9073086 ~ 9089033 (+) | False | AMCG00016136 |
| AMCG00016135 | mRNA | upstream | 515557 | 8964206 ~ 8978905 (+) | True | AMCG00016135 |
| AMCG00016157 | mRNA | downstream | 11232 | 9510024 ~ 9521955 (+) | True | AMCG00016157 |
| AMCG00016158 | mRNA | downstream | 33310 | 9532102 ~ 9550216 (+) | True | AMCG00016158 |
| AMCG00016159 | mRNA | downstream | 85571 | 9584363 ~ 9591639 (+) | False | AMCG00016159 |
| AMCG00016160 | mRNA | downstream | 158798 | 9657590 ~ 9658570 (+) | True | AMCG00016160 |
| AMCG00016163 | mRNA | downstream | 225797 | 9724589 ~ 9741418 (+) | True | AMCG00016163 |
| TU14288 | other | upstream | 268217 | 9223412 ~ 9226245 (+) | True | G11545 |
| TU14242 | other | upstream | 394426 | 9099420 ~ 9100036 (+) | True | G11509 |
| TU14219 | other | upstream | 422440 | 9068281 ~ 9072022 (+) | False | AMCG00016136 |
| TU13604 | other | upstream | 2828914 | 6664086 ~ 6665548 (+) | True | G10981 |
| TU13602 | other | upstream | 2832794 | 6654712 ~ 6661668 (+) | True | AMCG00016079 |
| TU14381 | other | downstream | 60672 | 9559464 ~ 9591649 (+) | True | AMCG00016159 |
| TU14432 | other | downstream | 100023 | 9598815 ~ 9599156 (+) | True | G11660 |
| TU14724 | other | downstream | 2370033 | 11868825 ~ 11871735 (+) | True | G11921 |
| TU14996 | other | downstream | 3279432 | 12778224 ~ 12781864 (+) | False | AMCG00016221 |
| TU15233 | other | downstream | 4123087 | 13621879 ~ 13627711 (+) | True | G12348 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| mexican tetra (Astyanax mexicanus) | TU237791 | True | 1619 | lncRNA | 0.40 | 4 | NC_035916.1 | 12792244 ~ 12794302 (-) |
