RNA id: AMCG00016157


Basic Information

Item Value
RNA id AMCG00016157
length 2773
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00016157
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9510024 ~ 9521955 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGGCCATGGTAACATCGCTGTGTAACGGACTGCGgcacaaacagacagaaataagCGGTTCCTGCTGAGgTATTATACAGGGTGACTGAATAATTAACAGTATTTGAAGTGGAACTGGAACATGTTTTGATGAAGACAATAAGACCAGTGGATACATGTCTGCAAGTTCGTGGAGACCATTTCCAACATTTACTGTAAGCTGAACAAGattcaCAGAGCAATATGAATTTGCCAGAGATTTGTGACAATGCTAAGAAAGCTAGAGAATATGCTCTACTGGGGAATTATGACTCTTCTATGGTGTACTACCAGGGAGTGATTCAGCAGATCCACAAACACTGCCAGTCCCTGCGAGATCCGGCCCTCAAGGTCAAATGGCAGCAGGTGCGACAAGAGTTAGTGGAAGAGTATGAACAAGTGAAGAGCATCATGAACGCACTGGAGAGCTTTAAGATCGACAGACCTGTAGACTTCCCGACCCCACAGCCAGAGGAATCCCCACGGGACCCTGTGGTGTGGCCTCCCCCAACTCCCGCAGAGCACAGAGCTCCCAGCCAGGTGAAGCGTCCCAATAGAGAAGTGAAGCCACTGAGGAAAGACTCCCCTGTGGTCCAGCACCGGGGGCCTGTGGGCCGGGCCCAGCCAATAGCCAAGGGAGACAAGCCCAGCACCAGAGAGAACAAGGACTATAGGACTAAAGCCAAGGATGACAAGGGTAAGAAGAACCCCCTGGATGGCGCAGGGGAAGGGGAGCTGAAGAAGTTCGATGGCACCGGGTATGACAAAGACCTAGTCGACGCGCTAGAAAGGGACATCGTGTCCAGGAATCCCAACGTGCACTGGGATGATATAGCTGATCTGGAGGATGCCAAAAAGCTGCTGAGAGAAGCTGTGGTGCTGCCCATGTGGATGCCAGATTTCTTCAAGGGCATTCGAAGGCCTTGGAAGGGAGTACTTATGGTTGGCCCACCAGGTACTGGCAAGACAATGCTAGCCAAGGCTGTAGCCACTGAGTGTGGAACGACATTTTTCAACGTGTCCTCTTCAACACTCACATCTAAATACAGGGGAGAGTCGGAGAAACTGGTCCGGCTCCTGTTCGAAATGGCCCGATTTTATGCACCCACAACAATCTTCATTGATGAGATCGACTCCATCTGCAGTCGCAGGGGTACGTCTGATGAGCACGAAGCCAGCCGCAGAGTGAAATCTGAGCTGCTCGTACAGATGGATGgGGTTGGAGGGGCATTAGAAAATGACGATCCTTCAAAAATGGTAATGGTATTAGCTGCGACCAACTTCCCCTGGGACATTGATGAGGCACTGAGAAGAAGATTAGAGAAGAGAATATACATTGCATTGCCCACAGCGATAGGCAGAGCTGAGCTGTTGAAGATCAATTTACGAGAGGTGGATTTGGCCCCCGATGTTGACCTTGCCCTCATTGCGGAGAAGATTCAGGGATATTCCGGGGCTGACATCACAAACGTCTGCAGGGATGCGTCCATGATGGCCATGAGGCGGCGTATCCAGGGTCTGAGCCCGGAGGAGATCCGCGCGCTGTCCAGAGATGAACTGCAGATGCCAGTGACCATGGAGGACTTCGAACTGACCCTGAAGAAAATCTCCAAGTCCGTCTCCGCCGCGGACCTAGAGAAGTACGAATCCTGGATGGCGGAGTTCGGGTCGGTGTAGGAGAGAGCTGTGGAGACGGTGTGCTCCTGTGTGCTCCTGTGGGAAAGGGAGTACGTCTGTGGTGTGTCCATTACCTGCGGTCTTGGAGTGCCCTGAACAACATAAACAACTCACTCCAGCCTCACCCAGATGTATCGTCTCTTCTTTAATGTTTACTTGAAAGGGAACCACTTTTTTATGTACTGTAACATACTaacttttttaaaagcatctttttgttgtgttttaaatgatgaaaataaGAGAACAGTGAGCAGGTACTGGTTGTCAGTTAGGGCAGAGGCTCCCAAACTGGGGTCTGCGGAACACTAGGGGTCCGTGAGGGAGTGCTAAGGGGTCCACggccaaccccccccacccaccgtattattttaaaatgcggTCTGAAACTGTCAGTCAACCCCTCGCTTTCGCATGTTGTTGCGTTCGCCCCCCGCTCTCACACGTTTTTACcatcagcccccccaccccttctcaCACTTGTTTACCGTCCTGTCCCCCCGTTCTCAATATTTTTTACTGGCCCCCCTCCCCGCTCTCACACATTAGTACCGTCACCCCTCCCGTTCTCAAGCGTTTCCCTGAGTTAGGGAACTATTGACAGGTATTGTTGGTGTAGTGTGAATGTGGTTAAATTTCTCATATGTTTTGAACTCTATTCAGAACATCTTTCTCTTGAAGGACACGTAACACACAATGCTAATTATGTTTTCAGtctgttatgttttaatttgtattttaatttgcctcaccttttcaaatgttttaccCAAATATAGCTTGTTTTCTTATAAACGgaaggcaaataaaataaaatacaatattaattgtGTATTGTTTCCATCCTAAAtgctatatttgtatatagacAGGAAAATATCACAGTAAATAACTTGCATGTGCTATTAGACAGTTCTTCAAGACTAAAGCTATGAAAATAATCAGGCAAACTGTTTCTTAGTTCTCTTTTTGTCATAAATGGTCATTTCTCACTGTCAGCTAATTactaaatgttctgtttttgtgtattgATGCTGGTCAATCTGCAGGACATGTTTCACtggattcaaaataaa

Function

GO:

id name namespace
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14315 lncRNA upstream 176165 9330891 ~ 9333859 (+) True G11572
TU14313 lncRNA upstream 195590 9313998 ~ 9314434 (+) True G11570
TU14244 lncRNA upstream 405842 9103625 ~ 9104182 (+) True G11511
TU14243 lncRNA upstream 408708 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 412097 9097269 ~ 9097927 (+) True G11508
TU14444 lncRNA downstream 442009 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 446587 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 487084 10009039 ~ 10009385 (+) True G11678
TU14453 lncRNA downstream 575743 10097698 ~ 10098122 (+) True G11681
TU14456 lncRNA downstream 613973 10135928 ~ 10136190 (+) True G11684
AMCG00016156 mRNA upstream 11232 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016145 mRNA upstream 103982 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016143 mRNA upstream 223149 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016140 mRNA upstream 390586 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016136 mRNA upstream 420991 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016158 mRNA downstream 10147 9532102 ~ 9550216 (+) True AMCG00016158
AMCG00016159 mRNA downstream 62408 9584363 ~ 9591639 (+) False AMCG00016159
AMCG00016160 mRNA downstream 135635 9657590 ~ 9658570 (+) True AMCG00016160
AMCG00016163 mRNA downstream 202634 9724589 ~ 9741418 (+) True AMCG00016163
AMCG00016168 mRNA downstream 269359 9791314 ~ 9797697 (+) True AMCG00016168
TU14288 other upstream 283779 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 409988 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 438002 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2844476 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2848356 6654712 ~ 6661668 (+) True AMCG00016079
TU14381 other downstream 37509 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 76860 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2346870 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 3256269 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 4099924 13621879 ~ 13627711 (+) True G12348

Expression Profile