RNA id: AMCG00016158


Basic Information

Item Value
RNA id AMCG00016158
length 8601
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00016158
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9532102 ~ 9550216 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTCAAGTGAAGTCCCCTCACCAGGCCCGGGTATTTCACAAATCCGGAGTAAGCTCTTTAAACAGCTGGCTTTCTCGAAGCCGGTGTATTCTTTTGAACTCGAGGAAGACACAGTTCCAGGAACAACACTGGGGTATGTGGAAGCATCCCACGCTTTGCAAGACAGGCAGATCTCTTACTCCCTGGTGGAGGACGATGGCGATGGCCTGTTCTTGCTGAACCCAGTCTCTGGAGAGGTCACTCTGTCACGAGCCTTGGATTATGAGTCAGAGCAGACTTACATCCTCACGTTGGGAGCTGGATATGGGGAGGCCCAGTTTGCTTGGGTCAGAGTTTATGTCAATGTTCTGGATGTCAATGACAATCCACCTGTCTTCAGCTTTGATGCCTACACTGTTTCAGTGCTTGAAGATATCCCAGTGGGGACTTGTATCTTCGGCCTCAATGTCACAGATGCTGATGATGgtgTGAACGCAGAACTGAACTCGGCAATAATCTCGGGGGATAACGAGGGGAGGTTTGCAGTGGGCTCAAATGGTATAATCTGCCTTCAGAGAGCTttagacagagaaacagagtctATATATAGTTTGACAATCCAGGTCAGTGACTGTGCTCTGCCTGAAGACACACGACTCACCAGCACCGCTCATATTACAGTATACATAGAAGATGTGAATGACAACGCCCCGTTCTTTACATCGGGTGAAAAGGTTCACGTTCCAGAGAACATGCCGGTCCATTCTGTAGTAACGGTGGTGCACGCTTTAGATGTGGATGCAGGGGCCAACAGTGCTGTTGAATATGTTCTCGAACACATGTCAGGGAACACTTTCAGGATTGATAGCTCAAGTGGTAGGGTCTACCTGCAGAAAGAGCTAGATAGAGAGCAAACCAGTATGTTGACGGTTCTACTCACAGTCCGAGACAAAGGGTCTCCCCAGCTTTCGTCTTCCATGAACCTTTCTGTGTTTATCGATGACGTCAATGATAATGCCCCGATTTTCACCCAGAGCTCTTACAAAGTCACAGTCATGGAAGACGTCCCCAGAGGCTTACCTCTATGTCAGGTTTTTGCTTCCGATGCCGATGGAGGCCCAAATGGACAGATTCGATATTCCATTTACCAGAGTCAGTTTGTCATTGATTCCCTGAGTGGAGACATATCTGTGATGGGCAGTTTGGACCGTGAAAAGCACCCATCTTACACTCTTACTGTCATTGCAATGGACCAAGGAGATGTTCCTAGGTCTGCAACAGCTACTGTCCATGTCCTCCTCACTGACGTCAATGACTTCGTGCCTACGTTCTCCCCGTCGCTGGTGACCGTGCACGTATCAGCTATAGATGAAGATCTTGGTGTCAACAGTCAGCTTACATATACCATTACGAGAGGAAATGAAGATGAACTTTTCGCCCTCTCTCCCACTGGCACGCTGAGTGTGTGGCACAGCCTGGACAGAGAATTGAAGGCTCACTATACTTTGGAGGTCATCGCAGTAGATTCAGgtcTTCCTTCCTTAACTGGCACTGGAACAGTACTGATAATAGTTGATGACCTGAATGACAACAGGCcattgtttcttaaaaatatctTCTCGGTTGCTGTGAATGAAGATGCTCGTGTAGGAACATCATGCACCACAATTAATGCCTCTGACCTTGATGAAGGTGTTAACGGGCAAATAAGATACTCTTTGCAAGATACAAGTTCATCCTTCTCCATTGATCAGTCATCTGGTGTCATCTTTACTACTGCTGTGTTAGACAGGGAGGCAGTGGGCAAATACACCTTGAAAGTAATAGGGACTGACATGAACACAACCCATCCACTCTCCAGCTCTGCCATAGTCTCAGTAGAGGTACAGGATGTGAATGATCAATGGCCTCAGTTTTTGAATGGCCCATATGTTGCAAATGTTCCAGACACCATAACCTCTGGTTCAATTGTCTGTGCTGTGAGAGCAGTTGACTTGGATACTGGGATAAATGCACAGCTCACCTTTTCGTTGTTTGGATCTAATTCGGACCAGTTCACTATTGACCCGATCAGAGGGGTTATTTTTGCTGCTCACACCACCACCGCGCCGAAAGACATGACACTCAGTGTCCGCGTGCGAGACGGTGGGAAGGAGCCGAAGACGGACACCACAACTGTGACTGTGAGATTCCAGAGTGCATCACAAATCCCACGGGTGGCAGCCGCTTCTCATGAGCACCTGCTTTCTGAGGACGTCGCCTTAAACACACAAATTACCGTGGTGACTGCAGAAAGTGAAAGAAGGGGCCTGGTGGGACCCATCTCATACTACCTCGCAGCCGGCAACTTTGAGGAAGCATTTCAGGTGCATCAGCAGACAGGAATACTGACCGTAAATAACCCACTAGATTATGAGACCAACTCTGAATTCCAGATATGGGTTGAAGCCCGAGATGCTGGCTTGCCACCTTATTCTTCATACATTAAAATTCACATAAGCATCAGTGATGTGAACGATAACGCTCCAGTGTTCACCCGCAGCTCATACAGGTGTGAGGTGTTTGAGAACATGCCAGCCAGCCTGGTGTGTCAGGTGTTAGCTGTTGATTTGGATCGAGGATTTAATGGGGAGGTGCAGTACAGTATCTTAACTGGAGACACGGAGAACACCTTTACGGTAGATGCGGACACTGGGGTCATAAGGACGAGGAAAAGTATCGATCGTGAGAAAACGTGGGTTTACAACCTAACGGTTCAAGCCAGAGACAAAGGGAACAGATTCCACACGGGCACCACACTGGTGGTTGTGACTGTGCTCGACACAAATGACAATGCACCTCGTTTCTCCCAGATCTTTTTCACTGAGATCCCTGAAAACACTCCTGTTGGATTTACAGTCATCCAGATCACATCGACGGACGCAGACATTGGTGTAAATGCTGTTAGCACGTATATGATTGTTAACACGAGTGGTAGCGTTCCTTTCGCCATAGATAATTCCAATGGATATGTAACTGTCATTCGGCCTTTAGACAGAGAGATTAAAGACCGCTATGTTGTCAGAGTCAATGCCAACGATTCTGCGTGGAGTGTGAACACAGAAGTCACTATATACATTACTGACATTAATGATAACAGACCTGTTTTTTCTCAGTTGTCATATTCTATCACCATCCCTGAGACCAAAGCTCGAGAAGTATTCATACTGCAAGTTAATGCCAGGGATTCTGACCTTGGGCAAAACGGACAAGTTTTCTACTATATTCAACCACCCAGTgacctgtttaaaataaatgcatcaaccGGGGATGTGCTAACAAAACAGCCCATTTCTCTCCATGAAGTTGGAACTCAAAACCATAGCTTTTTGGTAGTTGCCTCCGACTGTGGTGTTATGCCGAATCTTAGTAACGTTACTGTGAGGGTGAACTTTGTGCAGTACAATTATTTCCCACCAATGTTTCTTCCCTTTCAACCTCTCATCTCCGTGCCATTCAACTTAGATGTTGGAACCAAAGTGATGCAGTTATCAGCCATAGATAAGGATTCAGGAGATTTCAATGGTACTGTAGAATATTTTGTCACAGGGGGAAATGCTTCTCGTTTCTTTAAAGTTGAACAAAATAGTGGATCAGTATTTGTAAATACATCATTAAAGCAAATCTTCAAAGAAATGGCAACACTCCTAGTTACAGCAAAAGACAAGGGTGTTCCACCTCTTTCAACTCACACCTCTGTCAGTTTCctaataacagaaaataatcacTTTGCTCCACATTTTTCAGCGACACAAGTTACATTTGTAGTGCGTGAAGACCTGCCGGTGGGGTCGGTTATTGGGAAAGTCAAGGCTGAAGACAAAGATCCAGGACCCAATGGAATTTTACACTACTCTATTATTGAAGCAGAAAATGAggagaaaatattttcaattggGCAGAGTACAGGTTTTGTAACATTAATTGCCAGTTTGGACTTCGATAAACAAAAAGTTCACAGTCTTCAGGTCACTGCCAAGGATGATGGATGGATATCTAAAACTGGAAACCTTAATGTCATTGTAGAAGTGCAGGATGTGAATGATAACCCCCCTATCTTTTCTGCCACAGAGTATCTTGTGTCATTGCCTGAGAACTTACCTATTGGCACTACAGTCCTCCAGGTAAAAGCCACTGATATGGATTCAGGGGTAAACTCACAGATAAGTTACTCGCTTCTGAAAGGGGATGTTGATGGGTTTGCTTTGGATTCTCAGAATGGTGTTCTTACCACTCAAGaagtttttgattttgaattgcaACAGAACTATGAAGTAACTGTCAAAGCTTCCAACACAGACAGTCAGGGTCACTTCAGCTTAGCACAAGTTCATATATTAATCACAGACGTTAACGAATACAGGCCTAGATTCAGTAGAAGCCAGTACCACTTCACCGTTTCCGAGAGGGCTCTGGTTGGAACCAAAGTTGGACACGTTTTTGCCAGTGACTCGGATTTGGGTGTGGATGGAGAGGTGTTTTATTTGCTGATTGGCCAAAGTAAGAAGGCGGGATTTGATATTGACAAACGTAGTGGTGACATATTTGTCACAGGTGATTTAAAACAGCATGCCCAGAATCAGGCTGTGTTAAGAATCCTTGCTAAGAACAAGGGTAGCATTACTGGAACTGATGTTGAGGAAACACTTGTTCTTGTCAGTGTAATGGATGCCAATGATCCTCCgacattttcttcttcagtgtACCATGTGGACATCAGCGAAGGTACAGCAGTGGGAACATCAGTCGTTAAAGTGAAGGCCGAAGACCAAGATTTCCACTCCAATTGGAATAATTTCTCCTACAGCATCGAAAGTGGAAATCACAACGGCTCCTTCTCTGTTCATCCAGTTACCggatttatttccattgtgaCTCCGCTAGATAGAGAACAATGGGCCTTTTACAATCTGACAGTCACTGCAATTGATGGTGCACCGATTGCGGGCACAGGGAGCACAAAGGTACTGATTGTGGTGAGTGACATAAATGATAATGCCCCTATCTTAAGCTCTGTGGAAGGTCATGTGAGAGAAAACGAGCCCCATGGTACCATTGTTACCATCATGAATGCTACAGATGCTGATCTTCCTCCAAACCAGGGGCCTTTCACCTACCAGCTCGGCCAATCTGAGGCATCCAGCTATTTCACACTGACATCAGATGGAGTGCTTTCCACCATAAGACCACTAGATCGTGAGGAACACAGAGTCTTCCCCGTGATTGTGGTAATCCAGGATGCTGGGATTCCCCCTCAGTCGGCCACAGCAACAGTTCACATCACAGTGCTGGATGAAAATGACAACCCGCCGATGGTGAGAAACATGTACATTGAAGTCAAGTATTATGGTAGCTCTTTCTCAGGAGGTCTTATTGGGAATGTCAGACCAGAAGACCCCGATGTATCGGATGAGTTTAACTGCAGCCTCAGAATTGGTCCAAGAAACCTATTCAGCTTCCCATCCAACGGGTGTGATCTGTGGTCCTCTCCATATCAGGGAGAGGCTAAATTCAATCTAACCATAGCAGCCAGTGATAACCGCCACATACCTGTCAACAGTAGTGTCTATGTCAATTACAAAGGCTTCACCAATGCCACTATTGATAACTGCATCCTCTTTTATGTCACTTCACCGCAATTTGAGGTGTTCTTGTCTATAAACTATTTGAAGCTTATAAAAGCCTTGGATAGTCTCTTCAATTTACAGGCCTCTAAAATCCATGTGTTTGGAATGAAGCCTTTAGGAAATACAACTCTTCTACTGGCAGCCGTTAAGAATTACAATGGACAGTATATCAGTGGCACAGTGGCGAGTGGCATCTTTACAGATCAGAAAGAACATCTGGAGGCCCAAAGCAACATCAAAATCTCCCTCATCACCAGTGACCCTTGTTTCTCGAACCCTTGCCATCACCAAGGGACTTGCAATAAAAATGTTGATATAAGCCAAGATATTTCCATTCTGGAAAGCTCTACAGTAATATTTGTTTCCCCAAAGCATGTGGAGATATTTAACTGTTCCTGCCTGCCAGGCTACACAGGACTACTGTGCGAGCTGGACATCGATGAGTGTAATGGAGGTCCGTGTGATAATGGGGCTGCTTGTGTGAATTATCCTGGCGGGTTTTCCTGTAACTGCACATCTGGCTACTCGGGACCATTTTGTTCTTCCGATATCAAtgaatgcaaaaacatttcctGTCACAATGGTGGGACCTGTTTAAATATACGAGGGGGCTTTTACTGTGACTGCAATCTCGGTTATGTGGGTCAATTATGTGAGCACTTAGTGGACCACTGTGCATCATCTTCTTGTCTGCAGGGAACCTGTGTAAATTCACCAACTGGATATACTTGTTCTTGCCCATTTGGTGTGAGTGGCACTAACTGTGAAGAATACAGCTACGGCTTTGAAGAGCTATCCTATATGGAGTTCCCGCCTTTAGATTCCCAGAATAATGTTCTCTCTTTGGAGCTTGCCACAGTGCAAGAGAACGCCTTGCTTCTTTACAACTACGGTAGCAAAGGGGGTCCGACCAGTGAATTTCTGGCTCTGGAGATAGTGGATAGGAAAGCGAGACTCTCTTATAACCTGGGAAACGGCACTGTGAGGCTGAACACTGAGAAGATCATAGCAGATGGGCACTTTCACACCGTCTCTGCCAGCAGAACAGGGAAAGTTGCTGCTCTAGAAGTGGACAGCTGTTCCGAAGAGGAGAGCGATGGGTTCTGTTATTCACGGAGCGAAGGAATTGGCGTGGAGAGGACATTGGATGTGGGCTCCAATAACATGATGTTTGGCGGCATTAAGTCTATCGACCCCATTTTGCTACGGCCAGGTCAAGTCAGGACTGATGACTTTATTGGATGTGTGAAGGATGTCTGGCTAAATGGTGTTCCTTTAAACCCTTTCCGATCCTTGGCAGCTCGCAATGTGCTTGACAGTTGTCCACGTAAAGGCCAGCCATGTGGCAGCTACGTGTGTCTCAATGGGGGGACGTGTCACGACCACTGGTCCTTTCATCTTTGTCAATGTCTGGATGGTTTTACTGGAGAAAACTGTGACGCAGGATTCAGGGGATGTATCGCATATCTCAGATACAATGGGCGCATGTTACCCTTCTCTGGATTTAATGAAGTGGTGGAAGCACGACCCAGTCACCCTTTAGTCCAAGCTGGGTGTGTTTCTGCCAGTCTTTGTGTGACCCCCCTGTGCTCCGAACAGGCAACCCCATCGTCATGCCTGACCCAGCCCTGCATGAATGGAGGCACCTGCAACATCCTTGCTGGGGGCAGCGTGACCTGTAGCTGTGTATTGAATTTCACCGGTGTCCTGTGTGAACTGTGCTCATCCTCGTTCGAGAACCGTGCCGCTTGTCATGAAACGGAAGCCAGAGCGCCTTTGTGGATAACAGCCATTGTGGTCCCGGCCTGTCTGGTGCTGATGTTTTTGGTGATTGTGCTGTTTCGGGCACAggctgtgtgttgcattaagcGGAGCCAGGAATCCAAATCGctgcaaaaaggaaaacaaggtGCTGATAACAAAGCTTTTTGTGACGACAGCGCAGATGCGTCTGTGCTGGACGTCCCTGATCGTAAAGATAAACAGCCAGACGTTATCaaggcagagacacagaggcacACAACAGAGCACAGCATCAGTACAGGGCAGCCTGGTCTGTACCATGGCCTTATAGACCCTGACCTTGAATACTACGAAATAGAGAGCACCAGTAGTGATATCCTATACGAATCAGATGCTTTTCACCTTAGACACACCCCCAAACACAACTCAACATGCTATGCGATGGGAGCACAGGTTAGAGTGCAGAGGGAGTTGCCCAATCCTGAATCTCAGCAGCTTACtaaaatgtctgccaaggaATGCAAAGAACAAAGTTTCTTCTCGGGGCTGCAAACTTACTCCTCACATCTTGTCCCCGAGGGCACAGGCAATTTAAGACCAGCTGAAAGAGGTGAATTCAGCAAAGTGGATTATGAATCAGGACTAGATTTAGAGCTACCTTTTCTCTCCAAGGCATTAGCAAGGAGGACACATTTACCAGAGGCAATCGGGCCTCCTCTGGGTTTGTCTGTAGAGGAGGTGAAGAAACTGAATGCACCTCAAGCCTCTGTTCCACTACAAGGGCAGTTGAAGGTAAGGTGTCATCCTCCGCAGCGTGTATATGCAGCGCCAGCCAAGATGCCAGAGAGCTCCTCGGAAAGCGAGAGCCACAGCTCCTTTACCTGCTCAGAGTATGAGTACGAGAGGGAGCATTCCTTCACCAACAAGCAGCAGGCTGTCCACAGTGCCCTGGCTGACTACCACATCAGACAGGAAGAGAGCAGAAAGACCTCCACTCCTGACTATCCATTCACCAGCTATGACGTTGACAGGAGAGTTGACTCTTCTTCTCCTGAAGGGGCTGCTCAGCACTGGGAAAGCTTGCTGAATTTAGGCCTCCACTTTCAGGACTATGCCGCCGTTTTTGAGGACATTGCAAATTTGCCCATTGAATTAGAAAATGTGTACACACTCTGCGCTGACAGAAGGAGTGAGCTGGAAGAAATATTCTGA

Function

GO: NA

KEGG:

id description
K16669 FAT4; protocadherin Fat 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14315 lncRNA upstream 198243 9330891 ~ 9333859 (+) True G11572
TU14313 lncRNA upstream 217668 9313998 ~ 9314434 (+) True G11570
TU14244 lncRNA upstream 427920 9103625 ~ 9104182 (+) True G11511
TU14243 lncRNA upstream 430786 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 434175 9097269 ~ 9097927 (+) True G11508
TU14444 lncRNA downstream 413748 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 418326 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 458823 10009039 ~ 10009385 (+) True G11678
TU14453 lncRNA downstream 547482 10097698 ~ 10098122 (+) True G11681
TU14456 lncRNA downstream 585712 10135928 ~ 10136190 (+) True G11684
AMCG00016157 mRNA upstream 10147 9510024 ~ 9521955 (+) True AMCG00016157
AMCG00016156 mRNA upstream 33310 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016145 mRNA upstream 126060 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016143 mRNA upstream 245227 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016140 mRNA upstream 412664 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016159 mRNA downstream 34147 9584363 ~ 9591639 (+) False AMCG00016159
AMCG00016160 mRNA downstream 107374 9657590 ~ 9658570 (+) True AMCG00016160
AMCG00016163 mRNA downstream 174373 9724589 ~ 9741418 (+) True AMCG00016163
AMCG00016168 mRNA downstream 241098 9791314 ~ 9797697 (+) True AMCG00016168
AMCG00016170 mRNA downstream 262599 9812815 ~ 9813758 (+) True AMCG00016170
TU14288 other upstream 305857 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 432066 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 460080 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2866554 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2870434 6654712 ~ 6661668 (+) True AMCG00016079
TU14381 other downstream 9248 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 48599 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2318609 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 3228008 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 4071663 13621879 ~ 13627711 (+) True G12348

Expression Profile