RNA id: AMCG00016165


Basic Information

Item Value
RNA id AMCG00016165
length 438
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00016165
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9767215 ~ 9767922 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATTTACAAACCTTACAGCTGAAGCCATAACAGAATTTTACATCACTGGTTTCAATGAGACTCAGAATCCAAAGGCAGTCGGATGCatcattttgatcatttttttactgattttattgGGCAGCAGTGCAAACATCTACATCATCGCAAGGGACAAGCGTCTGCACACCCCAATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCCGCAGCACCAGCTCCAGCCCAGCAATGATCCTGGTGCTATTAGCTGACATCACTGCAATCTCTTACAGGGCAGCTTGTGTCAATCctgatgaatattttatttttacaactgtGATCTccttcttcattttatttggttcatttggttttatttttatatcctaCCTTAAGATAATCTTCACCGTGCTTAAAATTGCCCCCtcagaagacagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14434 lncRNA downstream 71161 9695773 ~ 9696054 (-) True G11662
TU14430 lncRNA downstream 172262 9589735 ~ 9594953 (-) True G11658
TU14420 lncRNA downstream 223472 9543508 ~ 9543743 (-) True G11650
TU14398 lncRNA downstream 268462 9496191 ~ 9498753 (-) True G11633
TU14447 lncRNA upstream 200655 9968577 ~ 9968783 (-) True G11675
TU14449 lncRNA upstream 222685 9990607 ~ 9991140 (-) True G11677
TU14452 lncRNA upstream 246278 10014200 ~ 10014451 (-) True G11680
TU14460 lncRNA upstream 469573 10237495 ~ 10237800 (-) True G11688
TU14471 lncRNA upstream 560797 10328719 ~ 10329089 (-) True G11699
AMCG00016164 mRNA downstream 54097 9712133 ~ 9713118 (-) True AMCG00016164
AMCG00016166 mRNA downstream 55217 9707271 ~ 9711998 (-) True AMCG00016166
AMCG00016161 mRNA downstream 82061 9684166 ~ 9685154 (-) True AMCG00016161
AMCG00016162 mRNA downstream 83217 9675938 ~ 9683998 (-) True AMCG00016162
AMCG00016147 mRNA downstream 277597 9478790 ~ 9489618 (-) True AMCG00016147
AMCG00016169 mRNA upstream 65416 9833338 ~ 9834282 (-) True AMCG00016169
AMCG00016167 mRNA upstream 95349 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016172 mRNA upstream 136121 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016171 mRNA upstream 137041 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016173 mRNA upstream 307533 10075455 ~ 10118219 (-) True AMCG00016173
TU14024 other downstream 1572783 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5846791 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 6228022 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6732032 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 7056530 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1078912 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1079009 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2555239 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3094177 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3094177 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile