RNA id: AMCG00016168



Basic Information


Item Value
RNA id AMCG00016168
length 942
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00016168
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9791314 ~ 9797697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACATTTACAAACCTTACAGCTGAAGCCATAACAGAATTTGACATCATTGCTTTCAATGAGACTCAAAATCCAAAGGCAGTCGGATGCATCATTTTGAccatttatttactgattttattGGGCAGCAGTGCAAACATCTACATCATCGCAAGGGACAAGCGTCTGCACACCCCAATACATCATCCACAGCTCCAGTACCAGCCCAACAATGATCCTGCTTGTGTCAATCCTGATGAATATTTTGTTGTATCAACTGTTCTTGccttcttcattttatttggttcctttgctttgatttgtataTCCTACCTTATGATAATCTTCACCCTGCTTAAAATTGCCCCCTCAGaagacagacaaaaaacatataGCACTTGTTCAAACCACTTAATTGTAgttgtttctatttttgttcCTCCATTTGTCAGTATTATTCTAACCCGTATAGGTTTGGTGTTGACCCTCACAGAACGTAATGCACTATTCATTTTCTCTTGTCTGGGCCCCTGCTTGGTGAATCCTTTTGTGTACTGCTTCAGAACAAAGGAAATAAGACCTTGTGTCAATCCTGATGAATATTTTGCTGTATCATCTGTTCTTgtcttcttcattttatttggttCCTTTGCTTTGATTATTATATCCTACCTTAAGATAATTTTCACCGTGCTTAAAATTGCCCCCTCAgaagacaggaaaaaaatgtacagcactTGTTCAAACCACTTAATAGTAGTTGTTTCAGTTTTTGCTCTTCCATTTGTCATTGTTATTGTAACCCGCATAGGTTTGGTGTTGAGTGTCACAGAAcgtaatgtattaattattttctcttctctggGCCCCTGCTTGGTGAATCCCTTTCTGTACTGCTTCAGAACAAAGGAAATAAGACGTCAGCTTTTCAGAATATTCAAGGCTGTTGCTCCCCAAGAATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14315 lncRNA upstream 457455 9330891 ~ 9333859 (+) True G11572
TU14313 lncRNA upstream 476880 9313998 ~ 9314434 (+) True G11570
TU14244 lncRNA upstream 687132 9103625 ~ 9104182 (+) True G11511
TU14243 lncRNA upstream 689998 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 693387 9097269 ~ 9097927 (+) True G11508
TU14444 lncRNA downstream 166267 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 170845 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 211342 10009039 ~ 10009385 (+) True G11678
TU14453 lncRNA downstream 300001 10097698 ~ 10098122 (+) True G11681
TU14456 lncRNA downstream 338231 10135928 ~ 10136190 (+) True G11684
AMCG00016163 mRNA upstream 49896 9724589 ~ 9741418 (+) True AMCG00016163
AMCG00016160 mRNA upstream 132744 9657590 ~ 9658570 (+) True AMCG00016160
AMCG00016159 mRNA upstream 199675 9584363 ~ 9591639 (+) False AMCG00016159
AMCG00016158 mRNA upstream 241098 9532102 ~ 9550216 (+) True AMCG00016158
AMCG00016157 mRNA upstream 269359 9510024 ~ 9521955 (+) True AMCG00016157
AMCG00016170 mRNA downstream 15118 9812815 ~ 9813758 (+) True AMCG00016170
AMCG00016175 mRNA downstream 1036632 10834329 ~ 10842459 (+) True AMCG00016175
AMCG00016174 mRNA downstream 1046430 10844127 ~ 10958032 (+) True AMCG00016174
AMCG00016181 mRNA downstream 1453450 11251147 ~ 11252118 (+) True AMCG00016181
AMCG00016182 mRNA downstream 1571665 11369362 ~ 11370140 (+) True AMCG00016182
TU14432 other upstream 192158 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 199665 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 565069 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 691278 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 719292 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 2071128 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 2980527 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 3824182 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 3833588 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 3837745 13635442 ~ 13637001 (+) True G12351

Expression Profile