RNA id: AMCG00016169


Basic Information

Item Value
RNA id AMCG00016169
length 567
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00016169
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9833338 ~ 9834282 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCATTTACAAACCTTACAGCTGAAGCCATAACAGAATTTTACATCAATGGTTTCAAAGGGACTCAGAATCCAAAGGCAGTCGGATGCATcattttgataatttttttactgattttattgGGCAGCAGCGCAAACATCTACATCATCGCAAGGGACAAGCGTCTGCACACCCCAATGGTAGCTTGTGTTAATCCTGATGAATATTTTGTTGCATCAACTGTGATCtccttctttattttgtttggtccatttggttttatttttatatcctaCCTTATGATAATCTTCACTGTTCTTAAAATTGCCCCctcagaagaaaggaaaaaaacatacagcactTGTTTAAATCACTTAATAGTagttgcttctgtttttgttcctcCATTTGTCAGTATTATTCTAACTCGTATAGGTTTTGTGTTGAGCCTCACAGAaggtaatgtattaattattttctcttctcttggCCCCTGCTTGGTGAATCCTTTCGTGTACTGCTTCAGAACAAAGGAAATAAGAAGAAAACTTTTCAGAATAATCAAGGCTGTGGCTCCCCAAGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14434 lncRNA downstream 137284 9695773 ~ 9696054 (-) True G11662
TU14430 lncRNA downstream 238385 9589735 ~ 9594953 (-) True G11658
TU14420 lncRNA downstream 289595 9543508 ~ 9543743 (-) True G11650
TU14398 lncRNA downstream 334585 9496191 ~ 9498753 (-) True G11633
TU14447 lncRNA upstream 134295 9968577 ~ 9968783 (-) True G11675
TU14449 lncRNA upstream 156325 9990607 ~ 9991140 (-) True G11677
TU14452 lncRNA upstream 179918 10014200 ~ 10014451 (-) True G11680
TU14460 lncRNA upstream 403213 10237495 ~ 10237800 (-) True G11688
TU14471 lncRNA upstream 494437 10328719 ~ 10329089 (-) True G11699
AMCG00016165 mRNA downstream 65416 9767215 ~ 9767922 (-) True AMCG00016165
AMCG00016164 mRNA downstream 120220 9712133 ~ 9713118 (-) True AMCG00016164
AMCG00016166 mRNA downstream 121340 9707271 ~ 9711998 (-) True AMCG00016166
AMCG00016161 mRNA downstream 148184 9684166 ~ 9685154 (-) True AMCG00016161
AMCG00016162 mRNA downstream 149340 9675938 ~ 9683998 (-) True AMCG00016162
AMCG00016167 mRNA upstream 28989 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016172 mRNA upstream 69761 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016171 mRNA upstream 70681 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016173 mRNA upstream 241173 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016176 mRNA upstream 1000130 10834412 ~ 10847535 (-) False AMCG00016176
TU14024 other downstream 1638906 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5912914 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 6294145 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6798155 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 7122653 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1012552 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1012649 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2488879 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3027817 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3027817 12862099 ~ 12862870 (-) False AMCG00016226