RNA id: AMCG00016170


Basic Information

Item Value
RNA id AMCG00016170
length 537
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00016170
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9812815 ~ 9813758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATTTTCAAACCTTACAGCTGAAGCCATAACAGAATTTTACATCACTGGTTTCAGTGGGACTCAGAATCCAAAGGCAGTCGGATGcatcattttaatcatttatttactgattttattGGGCAGCAGCGCAAACATCTACATCATCGCAAGGGACAAGCGTCTGCACACCCCAATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCAACAGCACCAGCGTCAGCCCAAAAATTATCCTGGTGCTATTAGCTGGCATCACTGCAATCTCTTACAGAAGACAGGAAAAAATCTACAGCACTTGTTCAAACCACTTAATAGTagttgcttctgtttttgttcttccatTTGTCATAGTTATTGTAACTCACATAGGTTTGGTGTTGAGCGTCACAGAAcgtaatgtattcattattttctcttctctggGCCCCTGCTTGGTGAATCCTTTTGTGTACTGCTTCAGAACAAAGGAAATAAGAAGTCAGCTTTTCAGAATATTCAAGGCTGTGGCACCCAAACAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14315 lncRNA upstream 478956 9330891 ~ 9333859 (+) True G11572
TU14313 lncRNA upstream 498381 9313998 ~ 9314434 (+) True G11570
TU14244 lncRNA upstream 708633 9103625 ~ 9104182 (+) True G11511
TU14243 lncRNA upstream 711499 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 714888 9097269 ~ 9097927 (+) True G11508
TU14444 lncRNA downstream 150206 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 154784 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 195281 10009039 ~ 10009385 (+) True G11678
TU14453 lncRNA downstream 283940 10097698 ~ 10098122 (+) True G11681
TU14456 lncRNA downstream 322170 10135928 ~ 10136190 (+) True G11684
AMCG00016168 mRNA upstream 15118 9791314 ~ 9797697 (+) True AMCG00016168
AMCG00016163 mRNA upstream 71397 9724589 ~ 9741418 (+) True AMCG00016163
AMCG00016160 mRNA upstream 154245 9657590 ~ 9658570 (+) True AMCG00016160
AMCG00016159 mRNA upstream 221176 9584363 ~ 9591639 (+) False AMCG00016159
AMCG00016158 mRNA upstream 262599 9532102 ~ 9550216 (+) True AMCG00016158
AMCG00016175 mRNA downstream 1020571 10834329 ~ 10842459 (+) True AMCG00016175
AMCG00016174 mRNA downstream 1030369 10844127 ~ 10958032 (+) True AMCG00016174
AMCG00016181 mRNA downstream 1437389 11251147 ~ 11252118 (+) True AMCG00016181
AMCG00016182 mRNA downstream 1555604 11369362 ~ 11370140 (+) True AMCG00016182
AMCG00016180 mRNA downstream 1576051 11389809 ~ 11390312 (+) True AMCG00016180
TU14432 other upstream 213659 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 221166 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 586570 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 712779 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 740793 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 2055067 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 2964466 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 3808121 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 3817527 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 3821684 13635442 ~ 13637001 (+) True G12351