RNA id: AMCG00016171


Basic Information

Item Value
RNA id AMCG00016171
length 1431
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00016171
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9904963 ~ 9919774 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCATTTACAAACCTTACAGCTGAAGCCATAACAGAATTTTACATCACTGGTTTCAGTGAGACTCAGCATCCAAAGGCAGTCGGATGCAtcattttgatcatttatttactgattttattGTGTAGCAGCACAAACATCTACATCATCACAAGGGACAAGCGTCTGCACACCCCAATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCCACAGCACCAGTACGAGCCCAGCAATGATCCTGGTCCTAATAGCTGACATCACTGCAATCTCTTACAGACTTCCTTACTGTCGAACCAATCTTAAATATGCTTTCTGTGACTATGCTGCTATGGTTAGGGCAGCTTGTGTCAATCCCGATGAATATTTTGTTGCATCAGCTGTGATCTCcttcttaattttatttgtttcatttggttttatttttatatcctaCCTTAAGATAATCTTCACTGTGCTTAAAATTGCCCCCTCAGAAGACAGGGAAAAAATGTACAGCACTTGTTTAAACCACTTAATAGTggttgtctgtgtttttgttccacCATTTGTCAGTATTATTCTAACCCGTATAGGTTTGGTGTTGAGCCTCACAGAACgtcatgtattaattattttctcttctctggGCCCCTGTTTGGTGAATCCTTTTGTGTACTGCTTCAGAACAAAGGAAATAAGAACTGAAGCCATAACAGAATTTTATATAACTGGTTTCAGTGAGACTCAGCATCCAAAGGCAGTCGGATGCATCattttgataatttatttactgattttattGGGCAGCAGTGCAAACATCTACATCATCGCAAGGGACAAGCGTCTGCACACCCCAATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCAACAGCTCCAGCAACAGCCCAACAATGATCCTGGTGCTATTAGCTGACATCACTGCAATCTCTTACAGACTTCCTTACTGCCGAACGACCCTTTCATTTGCGTTTTGTGACTATGGAGCTATGGTTAGGGCGGCTTGTGTCAATCCTGATGAATATTTTGCTGTATTAACTGTTCttgctttcttcattttatttggttCCTTTGCTTTGATTTTTATATCCTACCTTATGATAATCTTCACCGTGCTTAAAATTGCCCCCTCAGAAGACAGGAAAAAGATGTACAGCACTTGTTTAAACCACTTAATAGTagttgtttcagtttttgtccCTCCATTTGTCATTAGTATTCTCCCACGCATAGGTTTGGTGTTGAGCCTCACAGAAcgtaatgtattaattattttctcttctctggGCCCCTGCTTGGTGAATCCTTTTGTGTACTGCTTCAGAACAAAGGAAATAAGAAGTCAGCTTTTCAGAATATTCAAGGCTATTAGCGCAAGCATCTTCAGCAAACTCTTCAACCTGAGAATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14434 lncRNA downstream 208909 9695773 ~ 9696054 (-) True G11662
TU14430 lncRNA downstream 310010 9589735 ~ 9594953 (-) True G11658
TU14420 lncRNA downstream 361220 9543508 ~ 9543743 (-) True G11650
TU14398 lncRNA downstream 406210 9496191 ~ 9498753 (-) True G11633
TU14447 lncRNA upstream 48803 9968577 ~ 9968783 (-) True G11675
TU14449 lncRNA upstream 70833 9990607 ~ 9991140 (-) True G11677
TU14452 lncRNA upstream 94426 10014200 ~ 10014451 (-) True G11680
TU14460 lncRNA upstream 317721 10237495 ~ 10237800 (-) True G11688
TU14471 lncRNA upstream 408945 10328719 ~ 10329089 (-) True G11699
AMCG00016172 mRNA downstream 21 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016167 mRNA downstream 32538 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016169 mRNA downstream 70681 9833338 ~ 9834282 (-) True AMCG00016169
AMCG00016165 mRNA downstream 137041 9767215 ~ 9767922 (-) True AMCG00016165
AMCG00016164 mRNA downstream 191845 9712133 ~ 9713118 (-) True AMCG00016164
AMCG00016173 mRNA upstream 155681 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016176 mRNA upstream 914638 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016178 mRNA upstream 1081966 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016177 mRNA upstream 1114492 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016179 mRNA upstream 1304682 11224456 ~ 11237516 (-) True AMCG00016179
TU14024 other downstream 1710531 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5984539 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 6365770 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6869780 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 7194278 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 927060 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 927157 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2403387 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 2942325 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 2942325 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile