RNA id: AMCG00016172


Basic Information

Item Value
RNA id AMCG00016172
length 414
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00016172
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9904043 ~ 9904942 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCATTTACAAACCTTACAGCTGAAGCCATAACAGAATTTTACATCACTGGTTTCAAAGAGACTCAGAATCCAAAGGCAGTCGGATGCAtcattttgatcatttatttactgattttattGGGCAGCAGCGCAAACATCTACATCATTGCAAGGGACAAGCGTCTGCACACCCCGATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCAACAGCTCCAGTGTCAGCCCAACAATGATCCTGGTGCTATTAGCTGACATCACTGCAATCTCTTACAGTATTATTGTGACACGTACAGGTTTGGTGTTGACCCTCACAGAACGAAATGTATTAACTATTTTCTCTTCTCTGGGCCCCTGCTTGGTGAATCCTTTTGTGTACTGCTTCAGAACAAAGGAAATTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14434 lncRNA downstream 207989 9695773 ~ 9696054 (-) True G11662
TU14430 lncRNA downstream 309090 9589735 ~ 9594953 (-) True G11658
TU14420 lncRNA downstream 360300 9543508 ~ 9543743 (-) True G11650
TU14398 lncRNA downstream 405290 9496191 ~ 9498753 (-) True G11633
TU14447 lncRNA upstream 63635 9968577 ~ 9968783 (-) True G11675
TU14449 lncRNA upstream 85665 9990607 ~ 9991140 (-) True G11677
TU14452 lncRNA upstream 109258 10014200 ~ 10014451 (-) True G11680
TU14460 lncRNA upstream 332553 10237495 ~ 10237800 (-) True G11688
TU14471 lncRNA upstream 423777 10328719 ~ 10329089 (-) True G11699
AMCG00016167 mRNA downstream 31618 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016169 mRNA downstream 69761 9833338 ~ 9834282 (-) True AMCG00016169
AMCG00016165 mRNA downstream 136121 9767215 ~ 9767922 (-) True AMCG00016165
AMCG00016164 mRNA downstream 190925 9712133 ~ 9713118 (-) True AMCG00016164
AMCG00016166 mRNA downstream 192045 9707271 ~ 9711998 (-) True AMCG00016166
AMCG00016171 mRNA upstream 21 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016173 mRNA upstream 170513 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016176 mRNA upstream 929470 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016178 mRNA upstream 1096798 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016177 mRNA upstream 1129324 11034266 ~ 11126738 (-) True AMCG00016177
TU14024 other downstream 1709611 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5983619 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 6364850 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6868860 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 7193358 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 941892 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 941989 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2418219 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 2957157 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 2957157 12862099 ~ 12862870 (-) False AMCG00016226