RNA id: AMCG00016173


Basic Information

Item Value
RNA id AMCG00016173
length 701
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00016173
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 10075455 ~ 10118219 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttttaataAAGCAGTTTTGTTTAACATGGGAACAATGGCTTCTTCAGGCGTGGTCCAGCTGGTGGGCTACCAGGTCAGTGCTGGTCTGAGTCGCCCATTGCTGAAGATAGGACCATTCGTTGGATCCTCGGGATGCACTGAAGCCATAACAGAATTTTACATCACTGGTTTCAGTGGGACTCAGAATCCAAAGGCAGTCGGATGCATCattttgataatttatttactgattttattGGGCAGCAGCGCAAACATCTACATCATCGCAAGGGACAAGCGTCTGCACACCCCAATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCAACAGCTCCAGCGTCAGCCCAACAATGATCCTGGTGCTATTAGCTGACATGACTGCAATCTCTTACAGAGCAGCTTGTGTCAATCCTGATGAATATTTTGTGGTATCAACTGTTCTTgtcttcttcattttatttggttcctttgctttgatttgtataTCCTACCTTAAGATAATCTTCACTGTGCTTAAAATTGCCCCCTCAGAAGACAGGAAAAAGATGTACAGCACTTGTTTAAACCACTTAATAGTAGTTGCTTCTGTTTTTACTCTTCCATTTGTCATTAGTATTGTAACCCGCATAGGTTTGGTGTTGAGCCTCACAGAACGTAacgtattaattattttctcttctctggGCCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14452 lncRNA downstream 61004 10014200 ~ 10014451 (-) True G11680
TU14449 lncRNA downstream 84315 9990607 ~ 9991140 (-) True G11677
TU14447 lncRNA downstream 106672 9968577 ~ 9968783 (-) True G11675
TU14434 lncRNA downstream 379401 9695773 ~ 9696054 (-) True G11662
TU14430 lncRNA downstream 480502 9589735 ~ 9594953 (-) True G11658
TU14460 lncRNA upstream 119276 10237495 ~ 10237800 (-) True G11688
TU14471 lncRNA upstream 210500 10328719 ~ 10329089 (-) True G11699
TU14472 lncRNA upstream 210927 10329146 ~ 10329591 (-) True G11700
TU14473 lncRNA upstream 211423 10329642 ~ 10329937 (-) True G11701
TU14486 lncRNA upstream 398333 10516552 ~ 10516762 (-) True G11712
AMCG00016171 mRNA downstream 155681 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016172 mRNA downstream 170513 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016167 mRNA downstream 203030 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016169 mRNA downstream 241173 9833338 ~ 9834282 (-) True AMCG00016169
AMCG00016165 mRNA downstream 307533 9767215 ~ 9767922 (-) True AMCG00016165
AMCG00016176 mRNA upstream 716193 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016178 mRNA upstream 883521 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016177 mRNA upstream 916047 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016179 mRNA upstream 1106237 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016185 mRNA upstream 1326136 11444355 ~ 11445310 (-) True AMCG00016185
TU14024 other downstream 1881023 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 6155031 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 6536262 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 7040272 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 7364770 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 728615 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 728712 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2204942 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 2743880 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 2743880 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile