RNA id: AMCG00016175



Basic Information


Item Value
RNA id AMCG00016175
length 453
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00016175
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 10834329 ~ 10842459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCAGGGGCCCAAGCAGCCAGGATCCAGAACACTACCAGCCTGGCTGTGTATGCGGCGGAGCTGGCATTGGACTTGACTGATCACTCTACCCCCAAGGCCAGGCGTGAGCCCTCGGCTACTTTGGACTCGGTGGTGGAGCTGATGCAGTACTTGTTGGAATGCTCTAGGAAGGCCATGGAGCAGTCTCAGCAGATGGCTCAGGTCTTTCCTCGCCAAGGGGCACTTTCTTCTGTGTGCCATCACATCCAGTGCCACACTCCGGGTGAGAAGAAAGTAATATACATGATAGTGTGGATAAGCACACAAATTGAGACTGACACCAGGATCCTCAACACCTCTTTAGCAGCATGCCTGCCTCCTCTGCTTAATCCAATCATATACACCTTAAAGACTGAGGAGGTCATGGAGCAGATTAAGCTgttcttcagaaaacaaaaggttaaaccataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14500 lncRNA upstream 166823 10667204 ~ 10667506 (+) True G11726
TU14499 lncRNA upstream 167285 10666695 ~ 10667044 (+) True G11725
TU14497 lncRNA upstream 181685 10652391 ~ 10652644 (+) True G11723
TU14484 lncRNA upstream 363551 10470501 ~ 10470778 (+) True G11710
TU14467 lncRNA upstream 540733 10293371 ~ 10293596 (+) True G11695
TU14515 lncRNA downstream 1972 10844431 ~ 10844704 (+) False AMCG00016174
TU14517 lncRNA downstream 3362 10845821 ~ 10846045 (+) True G11742
TU14518 lncRNA downstream 4448 10846907 ~ 10848245 (+) False AMCG00016174
TU14540 lncRNA downstream 158991 11001450 ~ 11002646 (+) True G11761
TU14555 lncRNA downstream 302034 11144493 ~ 11144705 (+) True G11774
AMCG00016170 mRNA upstream 1020571 9812815 ~ 9813758 (+) True AMCG00016170
AMCG00016168 mRNA upstream 1036632 9791314 ~ 9797697 (+) True AMCG00016168
AMCG00016163 mRNA upstream 1092911 9724589 ~ 9741418 (+) True AMCG00016163
AMCG00016160 mRNA upstream 1175759 9657590 ~ 9658570 (+) True AMCG00016160
AMCG00016159 mRNA upstream 1242690 9584363 ~ 9591639 (+) False AMCG00016159
AMCG00016174 mRNA downstream 1668 10844127 ~ 10958032 (+) True AMCG00016174
AMCG00016181 mRNA downstream 408688 11251147 ~ 11252118 (+) True AMCG00016181
AMCG00016182 mRNA downstream 526903 11369362 ~ 11370140 (+) True AMCG00016182
AMCG00016180 mRNA downstream 547350 11389809 ~ 11390312 (+) True AMCG00016180
AMCG00016184 mRNA downstream 673297 11515756 ~ 11530359 (+) True AMCG00016184
TU14432 other upstream 1235173 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 1242680 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 1608084 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 1734293 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 1762307 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 1026366 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 1935765 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 2779420 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 2788826 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 2792983 13635442 ~ 13637001 (+) True G12351

Expression Profile