RNA id: TU14520


Basic Information

Item Value
RNA id TU14520
length 761
RNA type TUCP
GC content 0.40
exon number 2
gene id AMCG00016176
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 10834412 ~ 10847811 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTGTCGACTGAAGTCAGTCTTCCTGATAGTCAGGGCAATAAAAAGCaaGGATCCAGCATGGCCTCCGCTTCACCTCACAACCGCAGCCGCAGCGAGGAGCAGGATGACCCGGTGGATAAGATGATCTCCCAGACCGGCTGTGCTGATCTGCATCACGCTGTGCAGGACTGCATGGCGGAGCACCAGGACTGGAGGAAGTGCCAGCTGCAGGTGCAGAGCTTCAAGGACTGCATGCTGGCGTTTCAGAAAGTCAGAGCGCAGGCGATGGAGAGGCACAGGCTGCCACAGGCGCAGACCTGAGACAATGTCCGCAgttgtgcgcagatctgcagaattccagcgctcccattggtggagccgcgcagaactgcgcacATCTGTTCTACTCGACCGCGACCTATAACCCCTGATAAGTGAATCCGATGAAAAGACGTTTACCGGCCACAGTCAATTTGAAATAACTTCCTGAGTTTGCAACGACGTCAATCCTGATTTCATGATAAAAATCAGACACAcaataatcattacatttatacaactgAGGGTTGATCTGTTAGTTGCTGTAGGTGGCAGTTTCCCGTTTGAATGTGTGTGGGAATGCTTTATTTTCCCGGGAGGGTTTGTTCTTAAGTGACTTAAGTGactgtgattaaaataattgtgacATGACACAAACATAAGTCACGAAATTgttctttttcagtttaatcaatgtaaatgtattaaaacacttaaacaaAGTTACAATCACATTCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14516 lncRNA downstream 1432 10845186 ~ 10845402 (-) True G11741
TU14508 lncRNA downstream 131307 10715319 ~ 10715527 (-) True G11734
TU14507 lncRNA downstream 134568 10712062 ~ 10712266 (-) True G11733
TU14486 lncRNA downstream 330072 10516552 ~ 10516762 (-) True G11712
TU14473 lncRNA downstream 516897 10329642 ~ 10329937 (-) True G11701
TU14529 lncRNA upstream 60042 10907853 ~ 10908076 (-) True G11751
TU14532 lncRNA upstream 95715 10943526 ~ 10943774 (-) True G11754
TU14537 lncRNA upstream 130372 10978183 ~ 10978394 (-) True G11759
TU14583 lncRNA upstream 493059 11340870 ~ 11341449 (-) True G11801
TU14587 lncRNA upstream 539920 11387731 ~ 11388125 (-) True G11805
AMCG00016173 mRNA downstream 728615 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016171 mRNA downstream 927060 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016172 mRNA downstream 941892 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016167 mRNA downstream 974409 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016169 mRNA downstream 1012552 9833338 ~ 9834282 (-) True AMCG00016169
AMCG00016178 mRNA upstream 153929 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016177 mRNA upstream 186455 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016179 mRNA upstream 376645 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016185 mRNA upstream 596544 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016183 mRNA upstream 623915 11471726 ~ 11475792 (-) True AMCG00016183
TU14024 other downstream 2652402 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 6926410 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7307641 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 7811651 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 8136149 2710399 ~ 2710685 (-) True G10420
TU14856 other upstream 1475350 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 2014288 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 2014288 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 2022029 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 2706774 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile