RNA id: AMCG00016177


Basic Information

Item Value
RNA id AMCG00016177
length 651
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00016177
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11034266 ~ 11126738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCATGCCTGCAATTTGCAATCTCTTCATGATCTTAGTCTCCGATCTTCTGCCCCGCCCTCCCTTCCCCCTGTTGGCTCCCATGTCATGGTTCGCCATCTCCCACCTCGTGCGGGCCTACGCCCTCGTTGGTCTGGCCCGCATGTTGTCATTCTCGCCACAGACTCCTCGGGAGGCAGCTGTGCTCGTCCTGCAATTTGTCTTTTACAGTGATAAATTCCTGTCAAGCGGGAATTGGATTGAATGGGGGGGTCCGGACTATAATTGCCCTCTGAGTGGAGTAGGGGAGCATCAGAAGGGAAGGCAGGAAGGAACAAGTAGGGAAGAAAGGGAGGAAGGACGGAATTACTTGCAGGATAAACGAGACGAGACGAGACGGACCAGAGGGGTCAGAGCATCAGGAGAACCCGAGGGGAACTGGAAATCAGAAACCGCGAATCGGAACGAGGAAGAGAGGCGCATCGCAGCACGCAGCGGACATTGCAGCTGCAGcctAGGAGAAAGTGCGGCTAATGATCTGAAGAGAGCCGTTATGTGTATTGAAGAACCACTGATTCCTGTGCTGCTTGTAGCTGAGGAACTAGAAAGTGATGAGAGGCTGGAAAGTGGTGATGGGCTGAAGAGTGAAGAGGGACTTGAAGgtAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14537 lncRNA downstream 55872 10978183 ~ 10978394 (-) True G11759
TU14532 lncRNA downstream 90492 10943526 ~ 10943774 (-) True G11754
TU14529 lncRNA downstream 126190 10907853 ~ 10908076 (-) True G11751
TU14516 lncRNA downstream 188864 10845186 ~ 10845402 (-) True G11741
TU14508 lncRNA downstream 318739 10715319 ~ 10715527 (-) True G11734
TU14583 lncRNA upstream 214132 11340870 ~ 11341449 (-) True G11801
TU14587 lncRNA upstream 260993 11387731 ~ 11388125 (-) True G11805
TU14589 lncRNA upstream 273469 11400207 ~ 11400418 (-) True G11807
TU14598 lncRNA upstream 356824 11483562 ~ 11483793 (-) True G11814
TU14652 lncRNA upstream 574853 11701591 ~ 11717417 (-) False G11858
AMCG00016178 mRNA downstream 3 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016176 mRNA downstream 186731 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016173 mRNA downstream 916047 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016171 mRNA downstream 1114492 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016172 mRNA downstream 1129324 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016179 mRNA upstream 97718 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016185 mRNA upstream 317617 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016183 mRNA upstream 344988 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016189 mRNA upstream 457076 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016188 mRNA upstream 478079 11604817 ~ 11623059 (-) True AMCG00016188
TU14520 other downstream 186455 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 186455 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 2839834 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7113842 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7495073 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 1196423 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1735361 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1735361 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1743102 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 2427847 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile