RNA id: AMCG00016178



Basic Information


Item Value
RNA id AMCG00016178
length 519
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00016178
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11001740 ~ 11034263 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCATCTGAAATGACCACCACATCTGTCCTCAACAGCACGTTTGTCCGGCCAGATGGATTCTACATCCGTGGTTTCTATGCCTTGCAGCACAGcaattactattttatattcCTGGGGGTTCTTTACGTTGCTACGTTTATGGTCGGATTGGTGACGCGCTTATCATACTGTAAATCTACAATCGTTAACAGTTATTTTTGTGATCATGGGCCGATCTTTATAATCACTTGCAGTGATTATTCTAAGAACTGGTTCATGGCTGCCTTTTTTaccgtttttttattttttctccctctggCGTTAATCATGTTGTCTTATGTTgctattctctctgccctgttAAAGATACCAAATACCGACGGTCGTagaaaagctttcaaaacatgTACTACTCATTTAGCCTTAGTTGCTATATTTTATGTACCTCTCTTAGTCACCTACATTGTGGTTTGGTCGTCACCGTCGTCGCTGCCCTCTGACCCCGACCCCTCATCCCCCCGGCCACAGCAGCAGTAG

Function


GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14537 lncRNA downstream 23346 10978183 ~ 10978394 (-) True G11759
TU14532 lncRNA downstream 57966 10943526 ~ 10943774 (-) True G11754
TU14529 lncRNA downstream 93664 10907853 ~ 10908076 (-) True G11751
TU14516 lncRNA downstream 156338 10845186 ~ 10845402 (-) True G11741
TU14508 lncRNA downstream 286213 10715319 ~ 10715527 (-) True G11734
TU14583 lncRNA upstream 306607 11340870 ~ 11341449 (-) True G11801
TU14587 lncRNA upstream 353468 11387731 ~ 11388125 (-) True G11805
TU14589 lncRNA upstream 365944 11400207 ~ 11400418 (-) True G11807
TU14598 lncRNA upstream 449299 11483562 ~ 11483793 (-) True G11814
TU14652 lncRNA upstream 667328 11701591 ~ 11717417 (-) False G11858
AMCG00016176 mRNA downstream 154205 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016173 mRNA downstream 883521 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016171 mRNA downstream 1081966 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016172 mRNA downstream 1096798 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016167 mRNA downstream 1129315 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016177 mRNA upstream 3 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016179 mRNA upstream 190193 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016185 mRNA upstream 410092 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016183 mRNA upstream 437463 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016189 mRNA upstream 549551 11583814 ~ 11591097 (-) True AMCG00016189
TU14520 other downstream 153929 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 153929 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 2807308 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7081316 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7462547 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 1288898 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1827836 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1827836 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1835577 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 2520322 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile