RNA id: AMCG00016179


Basic Information

Item Value
RNA id AMCG00016179
length 1548
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00016179
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11224456 ~ 11237516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttgtcTTCTGCCATGGGCTTCTTCAGCTTGCACAGCTTCTGGTCTCTGGGTATCTGAAGAGCTCCATTTCCACCATTGAGAAAAGATATGGGTTTTCCAGTCAGACATCAGGCCTTTTGGCTTCCTTCAATGAAGTGGGGAATACGTTGCTGATCGTGTTTGTCAGTTTCTTTGGGAGCAGAGTTCACAGGCCCCGCTTCATAGGAGGAGGAGGGCTAATCGCCAGCCTGGCTGGGATTTTGATGGCCTTGCCCCATCTAATCACTGGGAAATACGAATATGACACCTCCATAAGCAACTTTGACAACAACATCTCAGATATTTGTCAGTTAGATTCAGCAGCCTCCTTTTTACTGCCAAACTGCACTGCGAGGAAGGGGAGTGGCAACGAGAAGGTCCTTCCTCTGATGTTCATTGGACAGCTGCTGTTGGGGATTGGTGGTGTTCCCATTCAACCCTTTGGGATATCTTACATAGATGACTATGCAAGTATACTGTTCGCCATCACAGTTATTGGGCCAAGCATGGCTTTTGTGTTAGGCTCCTTCATGCTACGTATCTATGTGGATATCGACAAACTTTCTGGTTTCCCCAGAATAATGCTAAGGACACTCAGGAATCCCATTTATCTACTGGTGGTTTTGGCACAGGTTAATCTGTCTGCAATGGTTGCAGGACTGGCCACCTTCATGGCAAAGTTTATTGAGAGACAGTTCACAAAAACAGCGTCTTTTGCAAACTTGATGATCGGGGGTGTAAATATCCCTGCCGCAGTGCTGGGTATAGTGGCAGGGGGAGCCATTATGAAGAAGCTGAAGATGTCAGTGAAGACTTCTGCCCTCATGAGCACCATTGCTGTGCTCATCTGTGTGATGTGCGCGATCCCTCTGCTCTTCCTGGGATGTTCCACACAGAATGTTGCTGGAGTCTATCCCTTAAAtaATCAACTTGATGGCTTTCCACAATGCAAAAGCAACTGCTCTTGCAAAGATACCTTTAATCCGGTGTGTGGTTCCAACGGTGTGGAGTACAGGTCACCCTGTCATGCAGGCTGCAAGTTGCATCTCCACGGATCCTGCTACAAACTCAATCCCAGCAACTGCATTACCGGGCACTTGTGGCAGCAGATGTTCTCATCTCTTTATTCCTTTCATGATATTATCAGCCTTAACTGGCTTTGTGGCCTCATTCTCTCAGACTCCTTCCTTCATGATGCTTGGATGCCTGGTCCAGTTTTGTATGGAAGTATCATAGACACCACATGTATTCTCTGGGGGGCAAAGTGTGACAAGAAAACGTCTTGCCACTATTATGACTTGGATCATTTCCGACAAAGGTTCCTGGGACTTCAAGTGCTTTTTGAAGTTGGTGCATTTTTGTGCTTCCTCATGGTCTTTATAATTTTGAGAAAGctgcagaaagaaaaggaaaggcagCAGGCATCTGACCCAAAGACAAAAAATGTGGATGACCACCTTGAAAAGATCAATCTCATAAAGGACCCTATAATGGACAAGTACAGAGAAGCCAATGTGTCGCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14537 lncRNA downstream 246062 10978183 ~ 10978394 (-) True G11759
TU14532 lncRNA downstream 280682 10943526 ~ 10943774 (-) True G11754
TU14529 lncRNA downstream 316380 10907853 ~ 10908076 (-) True G11751
TU14516 lncRNA downstream 379054 10845186 ~ 10845402 (-) True G11741
TU14508 lncRNA downstream 508929 10715319 ~ 10715527 (-) True G11734
TU14583 lncRNA upstream 103354 11340870 ~ 11341449 (-) True G11801
TU14587 lncRNA upstream 150215 11387731 ~ 11388125 (-) True G11805
TU14589 lncRNA upstream 162691 11400207 ~ 11400418 (-) True G11807
TU14598 lncRNA upstream 246046 11483562 ~ 11483793 (-) True G11814
TU14652 lncRNA upstream 464075 11701591 ~ 11717417 (-) False G11858
AMCG00016177 mRNA downstream 97718 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016178 mRNA downstream 190193 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016176 mRNA downstream 376921 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016173 mRNA downstream 1106237 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016171 mRNA downstream 1304682 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016185 mRNA upstream 206839 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016183 mRNA upstream 234210 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016189 mRNA upstream 346298 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016188 mRNA upstream 367301 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016187 mRNA upstream 410215 11647731 ~ 11662835 (-) True AMCG00016187
TU14520 other downstream 376645 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 376645 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3030024 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7304032 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7685263 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 1085645 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1624583 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1624583 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1632324 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 2317069 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile