RNA id: AMCG00016181



Basic Information


Item Value
RNA id AMCG00016181
length 525
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00016181
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11251147 ~ 11252118 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGAAACAGGACAATAAATGTTctgaattcagtttttttattacaaGACTTTGATCTAACTCCTGAAGGCACATATCTGGCTGTCATCATCGGGATTGCTCTGCTTCAAACAACCTGTGCAAAAGACACTACAGTAAATAATATTTACGGGCTGTTTATCACATGCATTTTGCATGGCATCGGTCTTTTCTCAGTTGTATTTACCTACAGCAGAATTCTGTTCACATGCCTTAAAAACAAAGAGTCTGAGTCCAAAATCAAAGCTCTTAATACATGTGCCACCCATCTATTAGTGTTCTTTATTTATGAGCTTTCTGGCATTGTCATTGTTCTTGCTTATCGATACCCTGATACTTCACCCAGTCTGCAAAAATGTATGGCAATGTCATTCATTATATTTCCTGCCAGTCTTAATCCATTGGTTTTTGGACTTAAAACTAAAGAAATTAGAAAGAGCGTGACCAAGATCTTCACAAACAGGGTATCGTTTAAAAGCACAAATCAACCAAGCTTAGTAAACCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14573 lncRNA upstream 10343 11237358 ~ 11240804 (+) True G11792
TU14559 lncRNA upstream 63065 11186392 ~ 11188082 (+) True G11778
TU14555 lncRNA upstream 106442 11144493 ~ 11144705 (+) True G11774
TU14540 lncRNA upstream 248501 11001450 ~ 11002646 (+) True G11761
TU14518 lncRNA upstream 402902 10846907 ~ 10848245 (+) False AMCG00016174
TU14580 lncRNA downstream 56000 11308118 ~ 11308357 (+) True G11798
TU14597 lncRNA downstream 231444 11483562 ~ 11483793 (+) True G11813
TU14639 lncRNA downstream 465965 11718083 ~ 11719651 (+) True G11846
TU14640 lncRNA downstream 467661 11719779 ~ 11720408 (+) True G11847
TU14641 lncRNA downstream 469950 11722068 ~ 11722558 (+) True G11848
AMCG00016174 mRNA upstream 293115 10844127 ~ 10958032 (+) True AMCG00016174
AMCG00016175 mRNA upstream 408688 10834329 ~ 10842459 (+) True AMCG00016175
AMCG00016170 mRNA upstream 1437389 9812815 ~ 9813758 (+) True AMCG00016170
AMCG00016168 mRNA upstream 1453450 9791314 ~ 9797697 (+) True AMCG00016168
AMCG00016163 mRNA upstream 1509729 9724589 ~ 9741418 (+) True AMCG00016163
AMCG00016182 mRNA downstream 117244 11369362 ~ 11370140 (+) True AMCG00016182
AMCG00016180 mRNA downstream 137691 11389809 ~ 11390312 (+) True AMCG00016180
AMCG00016184 mRNA downstream 263638 11515756 ~ 11530359 (+) True AMCG00016184
AMCG00016186 mRNA downstream 375575 11627693 ~ 11643410 (+) True AMCG00016186
AMCG00016190 mRNA downstream 428682 11680800 ~ 11717040 (+) True AMCG00016190
TU14432 other upstream 1651991 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 1659498 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2024902 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2151111 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2179125 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 616707 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 1526106 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 2369761 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 2379167 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 2383324 13635442 ~ 13637001 (+) True G12351

Expression Profile