RNA id: AMCG00016183


Basic Information

Item Value
RNA id AMCG00016183
length 1255
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00016183
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11471726 ~ 11475792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCAGAGAAGTGATGGAGAACAAATCCCTAAATGTGagctttaatttgactttagaTCCTTTTGTTCTACTACCTGGAGGCAAGTATCCCATTTTTTTTCTGGGACTACTCATCTTCTTATTCTGCCTTTTCTGTAACCTGACTATGTTGGTTTTGATCACTGTGGAGAGGAATCTCCACCAGCCCATGTACTTTATCCTTTTCAGTCTTCCTCTTAACGACTTGATTGGGATTAGTGCCCTGCTCCCCAAGGTGCTCTCGGACATTGTCACAGAAAGCAGCACTGTGAGACTTCCCAGGTGCCAGAACTCTATACCGAATGTCTTTTGTGACAATTCCTCACTTCTTAAGCTGTCCTGTGCCAATACAagtattaataacatttttggtttgtttatcaCAGCTGTCATGCAATTTATAAGCGTATCTGTGCAGATGTATTCCTACATTCAAATCCTAATTGCTTGTGTAGTTTCAAGAAGGTCAGAAGCCAAGAGTAAAGCTATCAACACCTGCATAGCCCAGCTGGTGATATTTCTGATGTTTGAAACTGTGGGGACTTTTACAATCCTTTCATACCGGTTTACAAATGTCTCACTTAACTTACAAAAAATTACAGGGATGCTCATTTTTATCATCCCTCCAGTATTGAATCCAATTGTATatggtttgaaaacaaaagaaataagaaatactcTGATAAAGGTTTTTAAACAAAAGGTTTCAATCatTCTACCTCTCAACGACTTCATTGGGATTAGTGCCATGCTCCCCAAGGTGCTTTTGGACATTGTGACAGAAACCAGCATGGTAAGACTTCCCAGGTGCAATAATTCTTTAACGAATGTTTATTGTGACAATCCTTCACTTCTTAAGCTTACGTGTGCTGACACAACCATGAATAATATTTTTGGATTATGTACCACAGCAATCATGCAGCTCATAAGCATATCTGTACAGGTGTTCTCATATGTCCAAATCCTCATCGCCTGCTTAGTTAACCGACAGTCTGATGCAAAGAGTAAGGCCATCAACACCTGTGTGGCTCAATTAGTCGTGTTCCTGCTTTTTGAATTTACCTCCACCTTCACCATATTGTCGCACcgctttaaaaacatttcttctAATCTGCAAAAAATCACAGGCATGCTCATTTTCCTGCTTCCTCCTGTTCTGAATCCAATAGTGtatggaatgaaaacaaaagaattGAGGAATACTTTGATCAAAGTTATGACAAAACAGGTTTCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14589 lncRNA downstream 71308 11400207 ~ 11400418 (-) True G11807
TU14587 lncRNA downstream 83601 11387731 ~ 11388125 (-) True G11805
TU14583 lncRNA downstream 130277 11340870 ~ 11341449 (-) True G11801
TU14537 lncRNA downstream 493332 10978183 ~ 10978394 (-) True G11759
TU14532 lncRNA downstream 527952 10943526 ~ 10943774 (-) True G11754
TU14598 lncRNA upstream 7770 11483562 ~ 11483793 (-) True G11814
TU14652 lncRNA upstream 225799 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA upstream 235492 11711284 ~ 11717417 (-) True G11858
TU14659 lncRNA upstream 262553 11738345 ~ 11738599 (-) True G11865
TU14679 lncRNA upstream 290360 11766152 ~ 11766577 (-) False AMCG00016194
AMCG00016185 mRNA downstream 26416 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016179 mRNA downstream 234210 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016177 mRNA downstream 344988 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016178 mRNA downstream 437463 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016176 mRNA downstream 624191 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016189 mRNA upstream 108022 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016188 mRNA upstream 129025 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016187 mRNA upstream 171939 11647731 ~ 11662835 (-) True AMCG00016187
AMCG00016195 mRNA upstream 243623 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016194 mRNA upstream 290650 11766442 ~ 11781547 (-) True AMCG00016194
TU14520 other downstream 623915 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 623915 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3277294 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7551302 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7932533 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 847369 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1386307 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1386307 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1394048 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 2078793 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile