RNA id: AMCG00016184


Basic Information

Item Value
RNA id AMCG00016184
length 906
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00016184
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11515756 ~ 11530359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCATATTGTCTCTATGGGGAGCATCACCATCACCTATGTCCATATATTTCTCATTTgccaaatgaagaaaaacaagaatctCAACAGCAAGGCACTGCAAACGTGTGCCACTCATTTAGTCGTGTACCTCGTCATGCTGTTGTCTGGTTTTCTGTCCTTTATTTTACATCGCTTTCCGGTGAATCCAGATATCAGAAAACtggcatatattttattttatgttcttccAGCAAACTTCAACCCGATTATCTATGGACTTAAAACTAAAGATCTAAGAAACAAGCTTGTCCAAATATTCAATAGAAAACCTCTGGTTGAGATGCAGAACACCTCTTTAAAACAGCCCATCATTTTTACTTTGGAAGGCTTCCTCTTGCCTAAAGCAGCTGAATACcctctgttttcagtttctttgctGGTTTACATCATGATAGTGGCTGGGAATAGTGTTGTGTTTGCTGTGATTTCCATTGATAAGAAATTGCATCAACCCATCAATGCATCGATATTACGATTAGCATGTGTGGATACAACCGTCAGTAATATCTACGGGCTTTGCATTACATGGTTTCTCAGTATTGGGTCACTTTTAGTGGTTGCTTTCTCTTACATTAAAATACTCATTGCATGTTTAGTAGAAAGAAATGGCAACAGCAAGAACAAAGCCATCCAAACATGTGCCAGTCACCTCACAATTTATATCATCTTTTTAATCTCCTCCTTAGTTATAATCATATCTCAGAGGTTTGAGCAGGTTAGCCCAAATGTGAAAAAATTTTGCTCACTCTTGTGTGTTGTACTTCCACCTGCTATCAATCCAATCATTTATGGCATCAACACGAAACAAATTCGCACTAACATCatcaaacagtttaaaaaacaggTTCTACCAAAGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14597 lncRNA upstream 31963 11483562 ~ 11483793 (+) True G11813
TU14580 lncRNA upstream 207399 11308118 ~ 11308357 (+) True G11798
TU14573 lncRNA upstream 274952 11237358 ~ 11240804 (+) True G11792
TU14559 lncRNA upstream 327674 11186392 ~ 11188082 (+) True G11778
TU14555 lncRNA upstream 371051 11144493 ~ 11144705 (+) True G11774
TU14639 lncRNA downstream 187724 11718083 ~ 11719651 (+) True G11846
TU14640 lncRNA downstream 189420 11719779 ~ 11720408 (+) True G11847
TU14641 lncRNA downstream 191709 11722068 ~ 11722558 (+) True G11848
TU14642 lncRNA downstream 192838 11723197 ~ 11723601 (+) True G11849
TU14643 lncRNA downstream 196583 11726942 ~ 11727423 (+) True G11850
AMCG00016180 mRNA upstream 125444 11389809 ~ 11390312 (+) True AMCG00016180
AMCG00016182 mRNA upstream 145616 11369362 ~ 11370140 (+) True AMCG00016182
AMCG00016181 mRNA upstream 263638 11251147 ~ 11252118 (+) True AMCG00016181
AMCG00016174 mRNA upstream 557724 10844127 ~ 10958032 (+) True AMCG00016174
AMCG00016175 mRNA upstream 673297 10834329 ~ 10842459 (+) True AMCG00016175
AMCG00016186 mRNA downstream 97334 11627693 ~ 11643410 (+) True AMCG00016186
AMCG00016190 mRNA downstream 150441 11680800 ~ 11717040 (+) True AMCG00016190
AMCG00016193 mRNA downstream 203519 11733878 ~ 11741377 (+) True AMCG00016193
AMCG00016192 mRNA downstream 211124 11741483 ~ 11749371 (+) True AMCG00016192
AMCG00016191 mRNA downstream 221159 11751518 ~ 11764647 (+) True AMCG00016191
TU14432 other upstream 1916600 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 1924107 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2289511 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2415720 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2443734 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 338466 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 1247865 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 2091520 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 2100926 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 2105083 13635442 ~ 13637001 (+) True G12351