RNA id: AMCG00016186


Basic Information

Item Value
RNA id AMCG00016186
length 4908
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00016186
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11627693 ~ 11643410 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGGATGCTCgccctttaaaatacattgccTCCCGTGTGACTGCGCGCCCCTTCCGGGTATACGAATAAAGTAACAAACTGCTGTTATCTGGCGCTACAGCATGGGCTGCAATGAAATCAGCCTGGATTTGGTTATTCCGCTGGCATTTTAGAAATCCCTCAGCTGCTGCAGGGACGCGACTACCAGCTGCTGGGGGACGGCGAGAATCACGTTGATCGTTTTAACTTCTTCAATTTGTACTAATAAATAACGTTGCATATGTGGACTGAATACCATAAATCAACAAGCAGACGTTTATTACAGTAGTAGTCTATGTCCACTTTGGCTCTGTTGTCAGAGATCGCTTAGCCCGTCGCGTCGGTGGTGGCCGTGTTCTCCTCCAGCTGTACCCGGCTCCCCAGCCTGGCTGCCCGTTAAGATGCTGCAGGGGCCCTCAGCTTTGGACCGAGACAAACCTCTGTTCCGGGTGCGTTTCACCAAATTCATCGTGGCCACGGTCCTCCTGCCGCTGCTGGGCTTCTTCTCCTGCATCTTCATTTctttgatttttcatttcagagagTCCACAGCTACACATTGCGGGGTTCCCAACTACCTCCCCTCCATCAGTGCCTCCATAAGTCTAACCCCAGAACGTTACATTTGGCGTTTCTGCATTGGCCTGCACTCTGCACCCCGGTTCATGATAGCCTTGGCCTACTTAAATTTCTATCGCATCCACCTCTCATCCCGACGCATCTATCTACTGCTGAACTATCTCAACCTGATCTTCAGCGTGTTGGAGAACGTGGGTCTTCTCCTGCTTACCTATGTGTCTTCAACTGAGACGTATAAGCTCCATAAAAATGGCTTCATCATGTTCATTTGTAGTGCGCTCATCCATATGATGATCACTTGCATTCTATGGAAAATGGTTAAGAAGTATTCAGTAAGTCCAGAGGACCAGACATCCTACCTCTGGAAGACTCGCCTCTGTGCCTTCAGTGTGATCTGCTGCCTCTTCGCGCTCTACTTCTACGTCCGGCACAACAAATACTGCGAACCAGGCAttTACACCTTCTTTGCATTCTTCGAGTACCTGGTTGTCCTTTCTAACATGGCTTTCCACTGGACGGCATACTGGGATTTCGGAAACAAGGAGGTGATGATCGCCACCCCCCCGGAGGACAAGCGCTTCTGACAGGGCAACCGAGGCCTCAGGAACAAGAAGAATCCTGGGAACGCTTACGAATTGAAGGATGCCACCGGGATCAAATCCGAGGAAGGTCTTTTTCATATCTTCGTTTGAGGTGCAGTGGATGCCACTAACCATTTCAGTGATGTTTGTCTCCTGACCACATAGAAACAATCCTGCTTATTGCACACAGCAGATTGAGTTGAAATCTTTAATCATAATATCGAAAAAGAAAGGGAATGCAGTGGGatctttacaaaacattttccgCAATGTGCATTGTTACACATACAAGTGTTAGTGATGGTCTCCACATCTCCACATCTTAAAGCAGCATTTAAAGGATTTTTAGACTGTTGAGCAGATGTGCTTCGAATTGTCTTCTCCGTTATTCCTTGCATTTTGTCATGCCAAACTGCAGTGCTAGCATATTGGGATAGTTTTGTGTTGCTAAAGGGTTTCTCTATGCTTTAAGCAGAACAATTCCCCAGCTCTGACATCTGCTTTCTGCTGAAGGGAATGCTTAGAGTTCGGCCCCTTTTCCTCTTTTCCCAGACATTATACAGTTCTGTGAAGCCTAGAAGGATGCCAGTAACTGCATTGGCAAAAGGGATGTTTTTTCTGTACTATTAGCACCTGACCactatatttaatttctctctctcttttttcttttgttattcaccccccttttttctgtatttaagtGAAGTTTTCTCACCACGTACTAAAATccatctctgtccctctgtcacATACATGGACTCCACTTCTAACAGCTGTTCTGTTTCAAGCATCTCCCACAAACCCCAGGCTTCACCGTCAACGGCGGAAGCAAAGCGTTTGTTTCCCGCTTCTTTGCTTTGTTCTAGAGGCGCTCAGCATTCCTGTCGATCCCCTTTCGGGTTTGTGTTTCAGGTCCTTGAATTGTGGAATTGTTGTGGCTCTCTTCTATTAACCCTCTTAAGCACTCATCATAACCAGTGGTGTCCAGGGGCTCCTTCCTGGGATTTTCCATCCTTCCTTCTGTCATTCTGAAACCCCACAGTGACAGAGACTCCCTTTCCCTGTTGTGTAACTGGAATATTCTGTCCCCAGGACTCGCTCATGCTCTCCACACTGTTACTGCCTGACGTTTGTTACATATTGGTATTATCAACTCAACAGACATCACATGCATTGTGTTGAGGGGTTTTAGCTAGACAAAAAGCGATGTATAAGCTATGTTGAAGTCTGCTATAATTAAGTGAATCtcaggaaatgttttcttcccCTTTGGGGGGGTGTAGTTcccttttttgttgtgtttttcacctCGAAATGTGAACATTGTAACTTCTGAGAATTGTACACTCTGTATGCAGTTTTAATTGTTGACCAAAAGCCCTTTTTGGGGCTCAAGTATTGGAGGACAAGCTTATTTTAGTGTATAGTAATGCTAGGGTGTCATTGCTCAGAGCATTGCAGATGGTTGCACAACCGGTTTTGTCCCATTGGATGTTTACAAACGCTCCTTCGCACATTCTGTAGTGGATTGGGTCATTTTGGGGTTAAGGATCCCAAGTCGTCtttaatcaatttaatgtacatttattaggTCTCTTTAATGATTAGCTGTTTGATTACTAGAGGTTTAAATGCTAAAAACAGAGAAATCGGCTCCTGGTGTGACCTCTTGTGACCATGTCCAAAATATACCTGAGGgaagtgtgttttaaatcagAGTAGACCCAAAATATATAGTGCCGGACTGAAATTCTTAATCTCTATTCTGAATTTCTTACTTAAGAGTAAATTAATGGACTGCATTGATGGCCATTCAACCTTTGAAGCACTTCTTGAAATGATTGTTAATTTTATAtccaagttttatttttgccatatgagatgtcatattttttatataatagtcTGGGCCAAATAAAACACCAGTGATTGAAAatcttgtaaataaaaaaaaacaaaaaaaaacacttatctAAATTCAATGGCATAATTcagtatttttgcattttagcCTGATGTCTTACTCACCCATAGTCATACGAATCcaaccttttttatttctatgcGTCCAGTTTGAATTTATCGTTTCGTTAGCTGAGCACaattgctggaagtcaatggtcACAAATCACTGACTCAAAACTGGCTAATAAATcttataaatacttaaaagcgTTGCCGTTTGTCACTTGTAGTcctaaaatactatatatatagtaaataaatatatagtatactatatatagttcaatacattaattaatttactagTAATCGTAAGAAATTAGTTTCCACATACTGCCTTATTTACAGACTACTTCATGTTCTGCCTGTGCTCTCTGTGTTATCATTCACGCACAGCTAGCATATCCTTGTGCCACCtcatcacagctgatgaaatgtGTAGTTCGGCGAGagttccaaaataaaaatgtttaaatatattaatcaaaatacTATAGATCTGGTATAGACTTTGAGACTTCATTTACAAATGTGCTCCACACAGCTTttgagcatttaaaatatatatttgccaagGTTTGAGAGTTGGAGATTTGCAACCATTTGCTTCCCCCAATTGTGCTTagctaacaaaacaataaattcaaatttcttcaaactggacgaacagaattaaaaaggtttccatggattcGTATGCCTATGGACGTGTAAGacatcaggctaaaatgccaaaataccgaaGTATGCCTTTAAGTCTCTTCCAGGGAATGCCCATTCAAATGAAGGTAAACTGAAAATGACATTGGTATCGGAGTGCTTTATTAAAATTCgttttttgtaattgtacaaGCAAAGTATAGGATACATTAGTATGTCTTACACCAATACACAATATGCTTATCAGGTGAAAATGTTATGAGCCCTGTAATAAACAaagatacaaatgtaaaaaagcaaaaatatctTCTGTTTTACAGGACaggaaacaaatgcatataattGTTGTAGAAAAAGCtgtcactgaaaatgtaatgtactaAAGACTTCAGCCTGTGTATCAAAAGCATGACTTATGGTAAATACTTAAGGTTTCATATTGAGGCCAGGAGCAAACTGCAACTATCAGACCAGACTGTCCTACTTTTGCTAAACTTTCTGCAAGATGTTTCTTTTAGGTGGGAGGACAAAAGTTGTGACAAGAACTCCCGCCTACTGAGGGCCAGCCCCAATGACAGGGACCTTCTCAGAGGGTTAATGGGGGGGCATTGACtgaaataattttttttaattaacttattgtGCTCCCATTTTAATCGTAACAACTCCTTTTTTCATGCTTAATCCGGTAACTGTTGCTTCCGTGACTGAATTAATGTTTCAATGTGGGTCCAGTGAGATCATGCTTTCTAAGCAGATGTACTAAATAAATGTCTTGTTACAAAAACATCTTGAGGTGAATGCATGAATCcttattgttctgtttgtggCAAGTCATTGGTTGACCTGCTTTTGAACCCCCAGAATAAAGTGGTCCAGCTCTGTTCCTAATGGGATACGAGGTCTTCTGGTTTGCCAATACACCCGACCTCTTGGTTACATCAGTGATTAGATGAATgataaattaacttatttttcaaGTCTTATTGCCTTAAAGCcctaacttttgttttttgccttgCTTTGAATCTTCCTTCTACTTAAGGAAATACTGGACAACTGCTAAATTTATCATGCTGTAGTTTCCCAGAATATTAAAA

Function

GO: NA

KEGG:

id description
K23552 PGAP2; post-GPI attachment to proteins factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14597 lncRNA upstream 143900 11483562 ~ 11483793 (+) True G11813
TU14580 lncRNA upstream 319336 11308118 ~ 11308357 (+) True G11798
TU14573 lncRNA upstream 386889 11237358 ~ 11240804 (+) True G11792
TU14559 lncRNA upstream 439611 11186392 ~ 11188082 (+) True G11778
TU14555 lncRNA upstream 482988 11144493 ~ 11144705 (+) True G11774
TU14639 lncRNA downstream 74673 11718083 ~ 11719651 (+) True G11846
TU14640 lncRNA downstream 76369 11719779 ~ 11720408 (+) True G11847
TU14641 lncRNA downstream 78658 11722068 ~ 11722558 (+) True G11848
TU14642 lncRNA downstream 79787 11723197 ~ 11723601 (+) True G11849
TU14643 lncRNA downstream 83532 11726942 ~ 11727423 (+) True G11850
AMCG00016184 mRNA upstream 97334 11515756 ~ 11530359 (+) True AMCG00016184
AMCG00016180 mRNA upstream 237381 11389809 ~ 11390312 (+) True AMCG00016180
AMCG00016182 mRNA upstream 257553 11369362 ~ 11370140 (+) True AMCG00016182
AMCG00016181 mRNA upstream 375575 11251147 ~ 11252118 (+) True AMCG00016181
AMCG00016174 mRNA upstream 669661 10844127 ~ 10958032 (+) True AMCG00016174
AMCG00016190 mRNA downstream 37390 11680800 ~ 11717040 (+) True AMCG00016190
AMCG00016193 mRNA downstream 90468 11733878 ~ 11741377 (+) True AMCG00016193
AMCG00016192 mRNA downstream 98073 11741483 ~ 11749371 (+) True AMCG00016192
AMCG00016191 mRNA downstream 108108 11751518 ~ 11764647 (+) True AMCG00016191
AMCG00016198 mRNA downstream 138770 11782180 ~ 11791632 (+) True AMCG00016198
TU14432 other upstream 2028537 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2036044 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2401448 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2527657 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2555671 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 225415 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 1134814 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1978469 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1987875 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1992032 13635442 ~ 13637001 (+) True G12351

Expression Profile