RNA id: AMCG00016187


Basic Information

Item Value
RNA id AMCG00016187
length 5240
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00016187
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11647731 ~ 11662835 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCTTTATGCTCTCGCCCTGGCTGTGTACTGGGGCGGGTCCTTCCCAAACTCCGCGGGCTGGAGCAGCATCGCTGACCGGACTGGGGCTGCTCTTCAGCAACGCCTCAGAGAGACGGGGACTGTATGCGAGACATCCAGTGAGAGATCCCATAGAGAGAAACAAGATTATGTTTGGATGCTGAAGAGGTGAACGGGCGAGAATGCAGAGTATAAAGTGTGTGGTGGTGGGAGACGGCGCCGTGGGGAAGACTTGCCTTCTGATCTCCTACACCACCAACGCCTTCCCCAAAGAATACATCCCCACCGTCTTCGACAACTACAGCTCCCAGGTGACGGTGGACAACAGGACTATTAGCTTAAACCTTTGGGACACGGCTGGCCAGGAGGAGTATGACCGGCTGCGCACCCTGTCCTACCCGCAGACCAACGTATTCGTCATTTGCTTCTCCATTGCCAGCCCGCCCTCCTACGAGAACGTCAAGCACAAGTGGCACCCGGAGGTCACTCACCACTGCCCCAACGTACCCATCCTGCTGGTGGGCACCAAGAAGGACCTGCGCAACGATGCCGATGTCTTGAAGAAGCTTAAAGAGCAGAACCAGACCACCATCACTCTGCAACAGGGCTCGGCCTTGGCCCGTCAGATCCATGCCATCAAGTACCTGGAATGCTCGGCCCTCAACCAGGAAGGCATCAAGGAGGTGTTTGCCGAAGCCGTACGAGCCTTCCTCAACCCCCTCCCCGCCGCCACCAAGAAACCTTGTGTGCTTTTGTAGAGGGTCAGCCATCACAGcagcagaaaacagaagaaataataataatcatatagataataataaagataacatgaggagaaatttaaaaaatgagaagaaaaaataaatccatgatGTGGCAGTAATCTTAGCTGTTATTATATTCGGGCCATGTTCAGTTTACCCCCGAGAGGAAAGGTTTTAACTAGAGAAAAGTGCAATTTTAGAtagtttttgatgttttttgaaAGCGGACATAAGGTGAGAGTTGTCCTCAGGCCGGTGTCCCGCATGTAATTCCAGCTTTGAATGCTGTTGTATCGGAAAGATAAAATATCTTTTATCACCTTTTATCTTTCTGCATTCTtaatcaccccccaccccctcctatTTCTTTGCTTACCTTCTTCTTTTCCAAATCTCTCATTTCTGTGGAGAAAGCGAAAATGGAAACACAGCTTAAATAACAGCTCTCATCTTTGGGGCGCCATGTGTTTATATGGACCGGCACAGAGACTTAAAGCAAGAATGGGTTAGTTATAGAACAGTTTAGAAACTATACTCTTTCTCAGATAGGACAGTAAGCCAAAAAAGTTAgacctttttactttttaactttttttttgtaacaggCTCTAAATCTAGAAGGTAGAATAAAATCACCAAACCACTATCTACGAAATGTGTTCTAACCCTGATAGGCCACCATTAACTATGTAAAGGGCCTGTTCTGTATTTAGGCTGCTTCATTCCTACTGGTTCATTTGTTCAACATGGTTTGCTGACCAAAAGCTGTCTTTCTCCAGGTTGATGTAAACAGCTTGTCGGCATGTCTTGTGTATAGACCTCTACTCGAGGGCAGTTCAGTTCTCTGTTTCATGTAATAGTGGTGGAGCAAGGTTTTgcacatcaaataaaatgcttttattgtgaCTTTACCTGTATTttgccttcactgtgctttactacactgggACTACCATAATGTACCATAATAAATGTTTCTAAGTTTCTAAGGCATGTTTACCATACTTCATTATGGTCCAGTGTATACAAATATTGTGGAGGCATGTTGAATCTAATAGAAGAAACACTGGTAAAATCATAGTGAAACCATgttcaaagtaattaaaagtaatcCTATGGTAAATTGACAAACAAACTTGCATAAGGGCACTACTAGTAGAATGATTCAcgcaaactttttttaaaatagatattGAGATGACTTAAACATCTGCAAAGGTGCACAGGTGCCGtgtgatattaaataaaaaaactgagatAACTAAGTAATgatatgttgttttattcaggGTGCAGTAAGACTTTTAACAGCAGACTCATAAACTCAAAAGAGCCCTAATCTCCAGCCTAGCTCAGTCAGTTCTGACTGCtcctttctttaaaagaaatctaatcaaacaataaaatagGCTGGCTACGGTCCCAGTTATTCACTAACAAATCAAATCAGGCATTTTTGTTACTGAGGCAGCAAGGGAGCAATATACTACCCATATGATTTAACTAGTGGGAGTACTTCTACATCAAAGCTGGAATACGCCAATAGACAGATATGCACAGAGCACCAGTGCGAAGTGTTGTGTCTGTGGTTGTCAGTGTGCCCTGAGAATGACGAATTTCAGCAATGCTGGTCTGGCCTGAATTCTGATTGGTGGGGAACACTGCATGGGAGTACTTGGGAATTGGAAGACCAGTGAATGGAGAGAGGCAGTGGAGCCCAGCACCTCCTCCCAGTTTTCACTATTTTCGCTTCATATATCCCGTTACTCTTTTACAGTTGAGGTTCTTTTAACAATATTATgggtctgattttttttttatctgagggttgttgtttttttttacttgacaGGTTCATTTGCCATAGTGTTTGAGAGCGaccattttgtttctcatgaaTGAAATTTTCCCTTCACAGAAATTGTCCCTGATACGTCATTTGCCTTTGTGTCTATTTGCAAACTTCTCTTTTACTGCACTGCGAAAGgaatgtctttgtgtttttgttttaatttgtatggaGGAAAAAcgattttgaaaaatatatattgtgttaataAAAAGGTACCATATCATCCCACAAAATACTTCCATCAACCCTAAAGACTGCAACATTTGACTGTGTGCTTGATGGTGTGTTTCTGTATAATGGAAGACTGTTATAGagtatacaaatgtatttttgccaGTGGGCCTGCTTATGGGCACCTGCTTATGTATACAATGCTGAAACAGCAAACATTAACCATAGTAGACTGCAGTCTTTACTTCAGGTGGCTTTAAtgggttgtgtgtgttgctttcaGCGAGGGTACTAGTTTCTGGTGGGTTTAGTTGATGCAGAGGTGTGGGTTCTGCTGATTTCACAGGAAGCAGCTGTGTCTGTATAAGGCTGTGTACCAGAAAGCAGTGTCTGGTTTCCAGATATCTTCACTGGGCTTAGAAACCTGCAGAGCACAGATTTAAACAAGGCCTGTCCAGTTACTACGAGCTAAGAGCATGAAATAATAAAGCTGTTTGGGACTTTGAATGTACCTTGAGACAGTTTCACCTAGCTGCTGCTAATTCTATAACTGagttataataaatacagtggTTTATGCATGATAGCCATTGGAACTGGGTCAGTAGATGCCATGACAGCAGATGAGCACAGCACTGTACAAATCTGGATCTTTTCTTTGCAGAGGTGCAAAGAGGGCACAGGGACACATAATCAAGGGTCACTTACCACCGTTAAACATACCTCTCTGACTTTGTCTTTTTATGGTTGAATTTCATGTGTATTTTTAGGGATTGCTGATGTCCCTCTGAAACAACACAATCTCAGTGTTGGCAATTGTGTTTGCTGGGCACCAcgcttttaatttgaatgatttcTTAATTTGTCGGTTCTACATTCTGGAATACCCTGTTTAGCCCCTTGTTTGTGCTTCTGCAACTTAACATGTTGTGCActgatgtaaaaatgtacaaaaaaagtaATGGATAATCGAGTAGCTGTAAGGTTTGACATCAGTtaatgtcatttatttgttcatttgttcaaACATACTGCATACTAGTAGGCTGCAGTCCAGACACAAGTCACTGTTCACTCTTCCCTTGtcaacaatttaaaacaaacaagacattaaaaagtaaatctcGCTCCCACAAAATGTATAGATGTGATTATCTTTCCTGTGGGCATTCAGTTAACCCCATTCACCTGAATGAGGAAACTGATGATATTTCAAATGACAGCTGAATGAATTTCAGAGCTTTCAGAGCATCACTGAGACCTCACAGTTGTCACTAAAGTATTGCTGTTGCTTCACGTATGAGGGGAAAGAAATGGTGTCCATTTCAGAAGTGTGTTACACTGTGCgattaataaaagcaaaacaaacagcttCAGTGAAAAACAGGAAACTGCAAGGTTAAATTTGAAGCCACTACAGCACTTGGTAGAGCACTGAACTGTGCTATTTGATTCTAGAATAATGCCAGATATGGTTGAGTTGAGCAGTGTTCCTCAGCTGTCACGTACTAAACCACTTATTTAATTGGCTGACAGCCTGTGTATGTTATGTTCCTTATATTGCAGATCCAGCTAATGCTGTTATACAGTTCTTCCTGAAGATTGTACTTGGTGGGTCTTTGTCTTATGCAGTTAATTGTGCTGCAAGGAATACCACTAGAATTATTCTCGTAAAGCAAATGTCTCTGTGATAGGAAAGTAATAATTCATGGAAAAGCCACTGTCAGCCTAAACGATTTGATAGTTCACTATCACTTGTCTCTGTataccaaaatatatttgtttctccCTCTTTTTTGTATCAATTTGAATGCTCCTTGCTtgaatgttctttaaaaattcttttaatttatgagtttagcattttgtaattaaataacactttaaaaaatatgaaaaaagtaattcatttgaagaaaatgtcattttttgaTATGAATATGTTAATTGCTTTATCTTGtctaaaattaaacttaaatgtatatCCAGACCACTTTTAACCTCATGCTACATTTTTGTGTAATCAGTACTTTTTATGCCTGTGTTGCCTCCATACTGTATTTGTACAACCCTAAATAGCTGCCAGTTTGGCCAGATTCAAATGCTTTGGCTGAAATCAGCAGTTTCCCAATGAAGTAGAGAAGGGACAGATTCACAAATATGATCATTTCCACACACTCACGTCACAATGAAGAGAATACCccaaaggttttaaaataaaggtgAGCAAGCACAAAATCCCATTGGCTTTCTATTGGTTTACTTGGgaattgcatttaaaagagTCAGATTAGCACTCATTCTTCAGATATTCATATACAGgattttgtgtattatttttttcaaacagtaACTGGAATTCTTAATTTGTGATGGTATACCTATATGGGAGAAAACTAGTGTTGtaatgctgtaaaaataaaggTGTCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0009617 response to bacterium biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07863 RHOG; Ras homolog gene family, member G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14598 lncRNA downstream 163938 11483562 ~ 11483793 (-) True G11814
TU14589 lncRNA downstream 247313 11400207 ~ 11400418 (-) True G11807
TU14587 lncRNA downstream 259606 11387731 ~ 11388125 (-) True G11805
TU14583 lncRNA downstream 306282 11340870 ~ 11341449 (-) True G11801
TU14537 lncRNA downstream 669337 10978183 ~ 10978394 (-) True G11759
TU14652 lncRNA upstream 38756 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA upstream 48449 11711284 ~ 11717417 (-) True G11858
TU14659 lncRNA upstream 75510 11738345 ~ 11738599 (-) True G11865
TU14679 lncRNA upstream 103317 11766152 ~ 11766577 (-) False AMCG00016194
TU14772 lncRNA upstream 169593 11832428 ~ 11947322 (-) False AMCG00016203
AMCG00016188 mRNA downstream 24672 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016189 mRNA downstream 56634 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016183 mRNA downstream 171939 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016185 mRNA downstream 202421 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016179 mRNA downstream 410215 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016195 mRNA upstream 56580 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016194 mRNA upstream 103607 11766442 ~ 11781547 (-) True AMCG00016194
AMCG00016201 mRNA upstream 155253 11818088 ~ 11836421 (-) True AMCG00016201
AMCG00016199 mRNA upstream 185449 11848284 ~ 11866869 (-) True AMCG00016199
AMCG00016200 mRNA upstream 205952 11868787 ~ 11886193 (-) True AMCG00016200
TU14520 other downstream 799920 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 799920 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3453299 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7727307 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8108538 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 660326 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1199264 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1199264 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1207005 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1891750 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037757 True 579 mRNA 0.58 1 NC_007132.7 30950097 ~ 30950675 (+)
grasscarp (Ctenopharyngodon idella) TU161638 True 740 lncRNA 0.50 5 CI01000027 7335871 ~ 7344580 (-)
mexican tetra (Astyanax mexicanus) TU161638 True 4098 TUCP 0.41 2 NC_035910.1 6288863 ~ 6292980 (+)