RNA id: AMCG00016188


Basic Information

Item Value
RNA id AMCG00016188
length 7835
RNA type mRNA
GC content 0.50
exon number 33
gene id AMCG00016188
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11604817 ~ 11623059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGTGGGTTTATGTGCgtttgaatatgaaatgcagTCAACACCGCGTTTTCAAAAGTTGCAGTGTCGTGTAGTGTTCTGAACAATACGGCCTTCTTGCTACAATACAACAGTTACTTCGTGGctaaatacattgaattgtCACTTTAATTGTCACAGTTTTTTGTATAAGTAGTAATAAGTATACGTTTTAGACAAAAAGTCAGTCAAATGCATTGTGTGCAGCTGCATTGGGTCATtgattacatatttgtttatccaaggttgtttttgtaaaaatataggCAAAGACGTATGCAGTCCTGATAGCAACAGAAGATGTTCAATAAATCATTTGGAGCTCCATTTGGGGGAGGCACTGGCGGATTTGGAGCTTCATCCACATTTGGGCAGAATGCAGGGTTTGGAACTACAGGTGGGTTTGGTGCCTCTGCATTTGGTTCCACTAATAACACTGGCGGGCTCTTTGGGAACACCCAGAATAAGCCAGTGGTGACCGCAAATCCTCAACAAATCTACACTGGTGCCGGTAGAGGAGGTGGACTCTTTGGCTCCAGTACCTTTAGCCAGCCTGTGACATCCTCCACTAGCACAGGCTTTGGGTTTGGTGCTGCCAGCGGCACCACCAACAGCCTGTTCGGCACCACCAATACAGGAGGAGGCGGCCTCTTCTCACAGCAGAGCAATGCCTTTGGTCCAAACAAGCCAGCCGCTTTTGGCACATTTGGCACCAGTACCAGCAGCGGTGGACTGTTTGGCACTACTAGCACGAACTCCAACCCGTTTGGAGGAACCTCTGGGTCACTCTTTGGCTCTTCTGGATTTGGTGCTACCCAGACTGGCACTACCTTGAAGTTCAATCCCCCCACTGGCAGTGACACAATGGTAAAGGGAGGAGTGACTACAAGCATAAACACCAAACACCAGTGCATCACGGCAATGAAAGAATATGAAAATAAGTCCTTGGAGGAACTACGGCTGGAGGATTACCAGGCTGGAAGGAAGGGTCCCCAGAACCCCATGGCCGGAGGAACAGGTGTGCTATTTGGTGCCGCCACTGCGCCAGCCAGCACAGCTACTGGGCTTTTTGGGTCATCTGCAACAAATACTGGCTTCTCCTTTGGGCAGAAAAATACAGCCTTTGGAACCAgCACGGGTGGCTTTGGCACTGCTGCTGGCAGCCTGTTTGGTCCGCAGCCGACCCAGCCAGGCGCCACTCTATTCAGCAAGCCTTTTGGCCAGGCCACCACCACCCCGAACACCGGTTTCTCATTTGGCAACACCAACACCATGGTCCAGCCTAACACCAGCAGCATGGGGTTGTTTGGAAACACCGCATCTCCGTCTGGAGGGCTGTTTGGTAACACTGCCAACACCAGCACTGCAACTGCTTTTGGGACTGGCACAGGACTCTTCGGACAACCCAATGCTGGCTTTGGCAATGTTGGCACACCGAATCTTTTTGGTAACAAGCCAGCTGGATTTGGCACTACCACAACCAGTGCACCATCATTTGGTACAGGCACTGGCCTGTTTGGAAACAAACCCACCCTTACTCTGGGCACCAATACGAACACCTCTAATTTTGGATTTGGTGCAAATGCTGCTGGTGGAAGCATTTTTGGTAACAAACCAGCTGCAGGAGGATTAGGCACAGGACTGGGAACTGCTTTTGGAGCAGCTGTTGGCACCGGACAAACATCTCTCTTTGGAAATCAGAATAAACTGGGGTCAACCCTGGGCACTGCAGGCACTTTTGGGCAGCCTGGATTCAATGCCACTGCTAGCAATCTGGGCTTTGGAGCACCTCAGCAGCCAGTTGCCCTGACAGACCCCAATGCTGCGGCAGCTCAACAGGCACTGTTACAACAGCAGATAAATGCCCTGGCATATGCTCCTTTTGGGGACTCCCCTCTCTTCAGAAACCCTCTGTCTGatccaaaaaagaaagaggagCGTCTTAAGCCAACAAATCCAGCTGCCCAGAAAGCCTTGACCACCCCGACTCATTACAAACTGACCCCCCGTCCAGCCACTCGAGTTCGTCCCAAAGCCCTGACGTCTTCTGGCTCCTCGAAGTCTCAGCTGTTCGATGGGCTGGACGATGATGAACCTTGTTTTGCCAATGGCTCCTTTAAGCCCAGCCAGAGCATTGACGAGGAATCTCGGCAACATGAAGTGGAGAGAGTAGATGATGACCTGGAGGTGTCCAAGTTCTACACCAATCCTATTGCAAAGCCCATTCCCCACTCTCTGGAGGGCAAACAGAACATTTCCATGCAGGACACCTTGACTGAGCTGAACGTGCGCAACGTGCAGCGGAACGGGCTGGAGGCCAGCAGTGAAGACGCCTCTTTAGGAGACGATTCTCtgcaggaggagagggaggaggagctGGAAGGCCAGCAGACCCCACACCCAGCAGGCATTGTCCTTGGACGTATAGGGTACTACACTATTCCATCCATGGATGAGCTCGCCAGGATGGTCAACGAGAACGGAGAATGTCTGGTGGAGAACTTCACTGTTGGCAGAAAAGGCTATGGCTCCATCTATTTCCCCGGGGAGGTGAATCTGACCAACCTGAACCTGGATGAGATTGTTCATTTCCGTAGGAAGGAGGTCATTGTGTACCCTGATGACCAGGCCAAGCCTCCTGTGGGAGAAGGCTTGAACAGACGGGCTGAGGTGACACTGGATGGTGTTTGGCCAAATGATAAAACCACTCGCAACCAAATCAAAGACCCAGAACGGCTCCTGGAGATGAATTATGAGAGCCGGCTGGAGAAAGCGTCCCGAAAGCAGGGCGCTCGCTTCCGGGAATACCGTCTTGAAACTGGGTCCTGGGTATTTGAGGTTGTCCATTTCTCCAAGTACGGACTGCAGGACTCCGACGAGGAAGATgatgtccccccccccaaagcaGAAATTAAGAAACTGAAGACTGCCAAAGTGCTTCCCCCAGAACAGCAGCAGCGATCGCCCACTCAGCAGATGGCCCTAAATGGGACAGCAGCCCCTCAAGCACAGAGCCTGGGGGTGCTGGAGCAGCTGAGCAGGGTGACCGAGCTGGACAGTGACATGGCGGATATCACGCAAGAGCCGCCCGCTGACAGCATGCTggaagatgaggaggaggaggagagctggGTGGAGGAGAGGGGCCGGGAGGCCGAGGCCATCACAGAGCACGAGCCCCTGTCTGCTTCCAGTCATATGGCATCCTCGCTTGGCATCAACCCACACACCTTGCAGATCATGAAGGCCTCTCTGTTTGCTGAGGATGACGAGTGTGACCTGTTCCAAGAGCAAGGTGTCAGCAGATTCTCGTACAAAATGGACTCCCCCCAAGATGTGGGCTCACCCCGTGTTTTATTCACTTCTCAAGGAAGACCATCTgTGGGAGGCTTACTACAGTCCCGGTTCAGCGCTGGCCCAACGACGCTCTTCTCGCAGCCCCAGGACACCTCTGGCAGCACCCCTCAGAGAGCGCTGCGCTCCACAGCAGCCGAGCCCTCGCGCCTGTCCCCTTGGCCCTCCTTAGGTCCTTCCTTCTTGATACCGACTCCCGCCCCCGAGATCCCCCTGCGCACTGTGGGGACCCGGCGGCAGCCAGGCCCAGTGTCCCTGGAGCACTCGGTGACGCTTGGCAAGGGCAAGCTGCTGATGGACATGGCCCTGTTCAAGGGCCGTTCCTTCCGTGTGGGCTGGGGGCCGAACTTGATGCTGGCTCAAAGCGGGGATCAGATCAGCAGCTCAAGCGGTGACACCCAGGATCAGCAGGCCGAGACCACAGGCTATGGATTTCTGCCTCAACCGGTGGCGCACACATCGTGTTGCCCATTTAAAGTGCACATAGAAAAGGTGGTCAGTGTGGAGTCTGTGGACATGGAGAGCCAGCGCAGTCTTTATTGCCGCCCCCTTGAGATTGAGCTGGAACACAGTACCATCAACACCGAGGAGGCATGCCCGCTAATCCAGCCATCTTCGGGCGTGGAGGCGCTCCATGAGTACGCCAAGTGGATCAGTGAGGTGAACAAGGAGCCACACACAGTCGATGCCACGGTCAAGCACTGGCATCTGGTGTGGACGCTGTGCGAGGCGCTGTGGGGTCAGCTTGGAGAACTGAACCCTTACACAGAGAGGGACAACGAGTACGTGCAGCAGCTGGAGCGCCGCAAGAGTTTCTCCCAGTGGCTGTCCCGCAGTGCGGCCCACAGCATCGAGGAGGAGGTGGGCCTGTCCCAGCACAGGAGCCATGTAGACGCCATCTTTAGCTACTTGACTGGTCACCGCATCAGCGAGGCCTGCAGGCTGGCTCAGAAGTCTGGTGATCACAGGTTGTCCTTGCTGCTGTCGCAGGCGGTGGGGAGCCAGTGCAGTCGAGAGCTCCTGGCCATGCAGCTGGTCGACTGGAACAGGATGCAGACTGACTCCTTCGTGCAGGAGGAGCGCCTGCGCATTTTTGCTCTCCTAGCTGGGAAACCGGTGTTGCAGTCTTCagacagctgtataaatgtctGCTCAGAGCTGGACTGGAAACGCTGCATCGCTGTCCACCTCTGGTACATGCTGCCCCCCACTGCCTCCATTGCAGAAGCTCTGTGCAAATACGAAGAAGCTTTCCAGGGCTCAGAAGAGTGTCAGAGGTATGCCTGCGCTCCCCTGCCTCCATACCTAGATGACTCTGGGCTCGGTCTGATGGAGGACAAGGAGAGTGAAGAGACTAGAAAATCAGAGCGACCCCTCTATGATATCTGCTTTCATCTACTGAAGCTTTACAGTGATAGGCATTACAGTCTCCAACAGCTACTCGACCCCTGCACTGTGACCTCTGACCGGCTGGACTATCGGCTGAGCTGGCACCTGTGGAACGCACTGCAGGCCCTCAACTACTCGCACCTCTCAGAGCAGTACCAGGGTCTGCTCCACACCAGCTACGCCGCACAGCTGGAAAGCGCTGGATTGTGGGAGATGGCTATATTTGTGCTGCTGCACACTCCTGACTCCAATCAGCGTGAGAGAGCTGTGCGGGAGATGTTGAACTtacactgccccctgctggagaCTGAGGACTCGTCGGAGCGGGAGCACTTTCTGACGGACAGGCTGCGTGTCCCATTGCAGTGGATCCACGAGGCCAAGGCCACGCGTGCCTGCCGAGAGGGAGACAAGCACAGAGAGGCTCTGCACCTCTACAGGGCAGGGCACTGGAACCAGTGCCACAGACTGGTCATTCAGCATCTGGCCTCTGATGCCATCATCAATGAAAACCATAGCTATCTCCTGGAGTTCTTGGAGGGTCTGGCAGCCCCTGAACGCTGTGCCGTCATCCAAGAATGGGACACATCCGGTCGGGTTTTCCTTGACTACATCCGTGTGATACAGACCTTGCAGGCCATTCAGAGGctGGAGGGTCCTGGGTAcgagctggagagactccacacCGAGGTGACATCCCTGTGCAGCAGGATCGAGCTCATTCAGTGTGCGACCGCCAAAGACAGGTTGGCCCAGTCAGAGATGGCAAAGTGTGTGGCCAACATTCTCCGTGTGGTGCTGAGCCTGCAGCAGGGAGGGCAGGGCACCCCGGACACCCAGCGCATCCCGCTCCGTCACCTGGCGCCGCACATCGGCCGCCTGCCCATGCCGGAGGACTACGCCCTGGAGGAGCTACGTGGCCTCACCCAGTCCTATCTGCGTGAGCTCACCGTCAGCCAATGACAGCCTGGCCTTGGACAAAAGAGGGCGGGGCAAAGCAAATGAGAATTCCAACCCTAGGACACTGGCTGTACTGTTTTTGTGTTGagatggcatttttttttcttccccctccaATTGATTGACAGTGGTTCATGGATAAAACATTCCTGTATTCAAAATTTTAACTtctccaattttttttttctttcccaaagcagcgacaaaataataataaaaaaaaaacgttagaGAAGACTACGtgtatgtttaataattaaactacattttgCAGAAGCTTGTTATAAAAACTTGttctatttttcatatttacccTGTTTCAAGGGAAAGTCATTGTAAATGAGTTTCTGCATAAAACAAAGTACAACTCGCTACATTTATTCACAGGAGTGTTTTTACATGATTTTGctgaacagatttttttttttttccccgttgtTGAATTCACCATTGGACTTGCCGACAGGTGTCTTTTAATCAAAGCCTCATTGTCATTATTACTACATTGGTAGACCTCAGTCTAATTTCTTAACTTACAACTTGAAATGTGTTTCTGGGGTCagggttgttttgtttgggaAGGGCCACATATTCAGTATTGTGGGGTCACTAACTTGAAAGGCAATTTGCAGGAAAGAGTAAGTCATCCTCTTTTTAATATGGTAGCAAATTTGAAATCGGAGGCATCTGGAAGAGTAAACCATGAGATGTACTGTGTTGATTTGCTTGGATGACTTTCCCATACTGGGGAAATCTACATGCAGACATGGACAAtctgtttttaacttttacacTGAATTGATTTAAACGACTTAATGCTTTTCTAGacaagaatgtgtttttgaGGCGAAGGCTAAAAGTACATCACGTAATGGttacagaaacagctgtgaaGCCATACACCAACTGCATGCTTTGGTAATGGTGTATTCATGCAAAAGGATAGCTTCTAGTATGGATAGATACTCATTCACTTTAAACTGCCAGTAATccatccatttctttttttttaaatagagccCCTTTCCCCCCTAGTGTATACCGAAAGAAATGTGGGCAATTACTGAATGCCATCTGGGTGCCATTCCCGCCCCCCCCCAAGTTTCTTCAGATTTTTAACttaagtttaaatgtaatttgcaaactggaataaacatttgttttcctataAAACACTCATGTCAACGAGACTTGGTTTTGCTGGCATTCAAGTCAATTGTTGGTGTTGTccatacaatacattttcataaacatgctgtaagtgcatctccagGTTTTGCAATGTTTACTTAGCACTTAATCTTAAAGTAGCTTTACCTGCCATGAGAATCTACAGGAGTTGTTAATGCATCTCCCAGGTAAAGCGTACGAGAGCACCCTGTAAGATACCCAAGAGTTTCATTTCAAGTTAACCCTTTATCCTTTTTTCATACATGGTTTAATTTTTCTAATTCACAGAAGATGACAATTTGCGTTTGACTGCATAAAGAATATTCATTATCCCTATACTTGATGTTGTGTAAAAACGcctggagattttttttttttttggtgtgtgtagTTCAAACCAATTTAATGCGTACTATTTATTCTTAAAGTTCTAAGCAATGGTCTACTGTCTAGAGCCATAGTTCTGCAGAGTCATTGACAGTAGTGCTGTGCAAACCAAATAGGAAAATGCGTTAATGTAGATAATTCatcttaaaacttttttttttttttttttttaaatctaatacaATTTTGTGCACCTATGTATCAGATCTGAATTTGCTTCCCCcctgatatttttaaaattcccTGTGGTCAAAGATGGTCCCTGGTTTGAGTGATGTGTTTGAAAGGTATGGCTAGATGCTTCctactgtacatactgtatttaatattgcTCCTTTTTCGATGGCTAGGGGAAGAATGCCTCTAGTATCTGTGCCTTCTAGGAAGATCTGGTCTGTCTTTCTGTGGGCGTTGGACTCTGTATGCATGGTTGTGTTCATGATCTGTTTTTATTgaatactgaacaaaaatgaatgattCTATTTTTTGTCTTCAGAGTTGTGTCCATTGCCAgtgattttgttgtatttttaatttagaataaaCATTGGAAACTAA

Function

GO: NA

KEGG:

id description
K14297 NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14598 lncRNA downstream 121024 11483562 ~ 11483793 (-) True G11814
TU14589 lncRNA downstream 204399 11400207 ~ 11400418 (-) True G11807
TU14587 lncRNA downstream 216692 11387731 ~ 11388125 (-) True G11805
TU14583 lncRNA downstream 263368 11340870 ~ 11341449 (-) True G11801
TU14537 lncRNA downstream 626423 10978183 ~ 10978394 (-) True G11759
TU14652 lncRNA upstream 78532 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA upstream 88225 11711284 ~ 11717417 (-) True G11858
TU14659 lncRNA upstream 115286 11738345 ~ 11738599 (-) True G11865
TU14679 lncRNA upstream 143093 11766152 ~ 11766577 (-) False AMCG00016194
TU14772 lncRNA upstream 209369 11832428 ~ 11947322 (-) False AMCG00016203
AMCG00016189 mRNA downstream 13720 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016183 mRNA downstream 129025 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016185 mRNA downstream 159507 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016179 mRNA downstream 367301 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016177 mRNA downstream 478079 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016187 mRNA upstream 24672 11647731 ~ 11662835 (-) True AMCG00016187
AMCG00016195 mRNA upstream 96356 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016194 mRNA upstream 143383 11766442 ~ 11781547 (-) True AMCG00016194
AMCG00016201 mRNA upstream 195029 11818088 ~ 11836421 (-) True AMCG00016201
AMCG00016199 mRNA upstream 225225 11848284 ~ 11866869 (-) True AMCG00016199
TU14520 other downstream 757006 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 757006 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3410385 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7684393 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8065624 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 700102 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1239040 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1239040 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1246781 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1931526 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_00230362_00248968.mRNA True 5183 mRNA 0.51 30 CI01000006 230218 ~ 248968 (-)