RNA id: TCONS_00009350


Basic Information

Item Value
RNA id TCONS_00009350
length 7392
RNA type mRNA
GC content 0.48
exon number 47
gene id XLOC_004719
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 23991276 ~ 24053079 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGCGCGCCGCTCAAGGCTCATTGTTGCGCTCGCCGGTGTGTGAGCATACTGAGCTTGTGCGTATGTGAGTGTGTCTGTCCGTGTGACTCGTAATATGTGTCAAGAGAGTGAGAGGAGACTTCTCTATGTAGGTGACTGAAGCTAATGTGTTTAACACCAGAGGTCAGAAAGACCGAGATCTGTCGAAGTAACAAGTTTTATCCTGAATCCCGCTCCACAATAACGGCACTTATGCGAAAGTAACGGATTTGTGAATAAAGAAAACAAAGATTTTTGTCAAGGGAACTTCTTGTCAAGAGAGGGGAAGGAAATAAGCCGGACACGTCAGAAGAGGATATTTATTGTTTTGGGAAACCGTAATATGAAAAAGGAGCAGGCCGAGATATTAGGTTTTGTCCCCCAGAAAGAGATCGTCTACAACAAACTTCTCCCGTACGCAGATCAACTAGACCGCGAATCCAATGACATTTTGGCCCAGATTAAAGGCAACTTGGGTCGGGCTGTCCAGCTCCGTGAGTTATGGCCCGGAGTTTTATTTTGGACACGGAAACTCTCCACGTACCTTCGGCTGTACGGGAGGAAGTTCAGCAAAGAGGACCATGTGCTCTTTATCAAGCTGCTGTACGAGCTGGTCACCATCCCCAAGCTGGAGATCAGCATGATGCAGAGCTTTGCACGACTCCTCGTCAACTTGCTGAAgaAAAAGGAACTGCTGTCCCGGGATGACTTGGAGTTGCCTTGGAGACCTTTATACGATCTCTATGAGAGTATCCTGTACTCCAAAACCGAGCATCTTGGTCTTAACTGGTTCCCAAATTATCGAGCAGAAGCCTCaactaaacaaaaaatgcttAATATTGTGCGCAAGCGCTCCGTGGAGAACGTGTTGAAGACGCTAGTCAAAAGCTGCAGAGTatattTTCCTGAATCGGCCACACAGGAGATGCTGGATGAGTGGCGACCATTACTATGTCCGTTTGATGTCACTATGCAGAAGGCCATTGGCTACTTTGAGCTCTTCTTGCCCACCATTATGCCCCCTGAACAGCACGACAAAGGCTTCAAgTTATGGTTTGATGAAATGATGAATCTCTGGGTCTCAGTGCAAAACCTGCCTGCTTGGGAGGGTAATCTAGTGAATCTCTTCGCACGCCTGGCTAATGACAACATTGGTTATGTGAACTGGGATCCATATATTCCCAAGATCTTCACCAGAATCCTGCGTAGCTTTAATCTGCCAGTTGGCACCAGCCAGATGGTAGTTCCTAGATACTTGACTAACTCCTACGACATTGGTCATGTGGTACTTTGGATTTCCTCCATGCTGGGTGGCCCTCAGAACCAGTCCCAAAAGCAGCTTAATGGGCTCTTCAGTAGTATAGCATCCTTCTATCACCCCTCAAACAACGGACGCTGGCTGATGAAACTGATGAAGCTCCTTCAGCGTCTTCCTGCCAGTATAGTTCGACGACTGCATCGGGAGCGTTATAAGAAACCCTGCTGGATCACCCCTGTTCCCAGCACTCACAAACTCACAGACCAGGACGTGACCGACTTTGTGGAGAGCATGAAGCAGCCGGTTCTGATGGCCATGTTCAGCAAGACGGGCAGCATGGATGCAGCTCAGGCCCTGCAGAACCTGGCACTCATGAGACCAGAGCTGGTCATCCCACCTGTGCTAGAGAAGACGTATCCTGCTATGGAGACACTGACAGAGCCACACCAGCTTACTGCCACTCTCAGCTGCATGATTGGCATGGCTCGCAGTCTTCTCAGCGGCGGCCGACATTATCCTGAAGGCCCTGCGCACGTCCTGCCTCTGCTTATGAGAGCACTGCCTGGAGTCGACCCTAATGACTTCAGCAAATGCATGatCACGTTCCAGTTCATTGCTACTTTCACTACTTTAGTGCCTTTAGTGGACTGTTCATCAGCCCTCCACGACAAGAATGACTTGACAGAGaTGGAGAGAGAGTTGTGTTCAGCTTCTGCAGAGTTTGAAGACTTTGTTTTGCAGTTTATGGACAGGTGTTTTGCATTGATTGACAGCAGTACACTGGAGCAGACGCGCgaagagacagagacagagaaaaTGACTCATTTAGAAAGTCTGGTAGAGCTGGGCCTTTCTTCTACCTTCAGCACCATTCTGACACAGTGCTCCATGGAGATATTCAAGGTGGCTCTCGAAAAAGTCTTCAACTTCGCCACCACCAACATCTTTGAGACTCGTGTCGCAGGCAGAATGGTGGCAGACATGTGCAGAGCGGCTTCTAAGTGTCACCCTGCTGAGTCTCTCAGGCTGTTTGTACCGCACTGCTGTAACGCCATTACTCATCTAACTGCCAatgaAGATGTTTCAAATGAGGAAGAACTGGATAAAGAACTGCTCTGGAACCTACAGCTTCTGTCTGAGGTGACTCGCGTGGATGGGGAAAAGCTGCTCCCGTACCGCACACAGCTGGTGCAGATTTTACAGCTGACCCTGCGCTTGCGTTGTAAGCAAGGCTACAGTCTGGCCTGCAACCTACTACATCATGTCCTGCGTTCCACAGCACTCATCTACCCCACAGACTACTGCAGTGTCCCTGGTGGCTTCAGCAGGCCCCTGCAAGAGTACTTGCCCATTAAGGATTGGGGCCGTCCAGGGGACCTTTGGAATCTGGAGATTCAGTGGCACGTACCCAGCACAGAGGAGACCGCTTTTGTGTTCTACGTTCTGGACCTTCTGCTGCAGCCAGAGCTACAGCGCCTGCAAAGATATGCACAGGGAGAGCAAGAAATGAGCAGAGATGATGTTCTTCAGAGTCTGTGTATTGTCCAACACTGTCTACTGGGTGCTGGAAGTATGCTTCCACCTCTTGATGGGTCTACAGTCACTGGCCTTGTGCCCAGCATGGTTAATTTGGAGGAAACAAAGCTGTACATCGGTGTTGACTATGATCAGTCCAGAGAAAACTACCGTGAGGCTGTCTGCAAAGTGATGAGACAGTTGCTTCATTATATTCTGGAGCACTCAGAGGATGACACCAAATCCCTATTTGCCATTATCAAGATCATCAGTGACTTGATGCATTTCAAAGGTTCCCACAAACATGAGTTTGACTCTCGCTGGAAGAGTTTTACTCTAGTGAAGAAGTCGATGGAAAATAGGCTTCATGGGAAGAAACAGCACATCCGAGCTCTTCTGATTGACAGAGTTCTTCTTCAGCATGAGATGAGAAAGTTGTTGGTCGAGGGGTGTGAATACAAGACTGTTCATCAGGACCTTTTGAGGGATCTTTTGCGTCTTTCTACCAGCACTTACAGCCAGGTTCGCAGCAAAgcccaaaatgttttatttacagcTTTGGGGACCTATAACTTCTGCTGCAGAGATATTACTCCACGTGTACTGGAGTTTTTGGAGCCCACACGCACTGATGTCACACAGCAACAGTTTAAGGGGGCGCTGTATTGCTTGCTTGGAAACCATTGTGGAGTGTGCCTTGCTAACCTGCATGACTGGGACTGCATTGCTCAGACGTGGCCGGCCATTGTACGCTCAGGCCTCAGCTCTGCCATGTCCCTAGAGAAGCCCTCCATTGTCAGACTCTTCGACGACCTTGCAGACAAAGTTCACCGTCAGTACGAGACCATCGGCATCGATTTTACTGTACCTGAGAATGCAGTTTTTCTAGGCCGGAGCATCACCAATTCAAGCCAACCCACTCCACACATGGGTACTCCAGAAGACCAGGAGTTGCAGCAGGGACTGGCAGTTCAACAAGCTAAAAACCGCGAGGCAGAGCAGAAATATGAAAAGCTTGTAAAAGATCTGTTGGAATGTCTAGATGACAGGGACCTACCTTGGAAATTTGAGCACATTGCTATCGGTTTCCTGTCTCTACTGCTGAGAGATGACTATCCGCTCCCAGCTCCTGCTGTATTCTTCTTTGTACAAAGCCTAAACCACGATGCACTTGTTGTTCGCAAGATGGCGATAGCTGCAGTTGCAGGCATACTGAAACAGCTGAAGAGACCACGCAAGAAAATACCAGTTAATCCCTGTGATATAAGTGGGGTAACTGAGCCGGAGGAGCTGGAGGCAGGAGACCGGCCAGGGAACGACTGGCTGCAGTACCACAGTGAAAGCCTGCCGAACTCCCAGCAGGACTGGGATGCTTTCTGCTTTGTAGAAAAAACCCACTGGGGCTACTACTCTTGGCCAAAGAAGTTGATGGTGTATGCTCCAGCAGCAGAGCAGCCCAAAGATCTCGCTCCTGACACCATGAGTGAGagGGAAGCTATCATCAATGACCATTTCACAGACCCCACGTTCATCAACCAGCTCATCAAGTTCCTGTCCCTTGAGGACCGAAAGGGCAAAGACAAGTTCAATCCTCGTCGCTTTTGTCTCTTTAAGGGACTTTTCCGGAACTACAGTGATGCCTTCCTGCCAGTTTTAAAGCCTCATATGGAGCGGCTGGCAAACGACTCTCATGAGAGCACCCAGCGCTGTGTGGCTGAGATCATCGCAGGCCTGATTAGAGGCAGCAAACACTGGAGCTTTGGAAAGGTGGAAGCGTTATGGGCATTCCTCATTCCTCTGATGCGAACAGCGCTGTCTAATATTACTGTGGAGACCTACGCTGACTGGGGTACCTGCGTGGCAACTGCTTGTGAGAGCCGAGATCCACGAAAGCTCCACTGGCTTCTAGAAATGCTGATGGAGTGTCCTCTCAGCGGGGAAGGAGGATCATTTGTAGATGCCTGTCACCTGTATGTACTTCAGGGTGGTTTGGCACAACAGGAGTGGAGGGTCCCAGAGCTGTTGCACAGATTGCTGAGCTACCTGGAGCCCAAGCTCACTCAGGTTTATAAGAATGTGAGAGAGCGTATCGGCAGCGTATTGACATACATCTTCATGATTGATGTGGCTCTGCCCTACACTCTGCCCACTAAATCCCCACACATCGCCGAGTTCACCGAGCGGATCCTGTCTCAGCTGAAACCCCTGATCGAAGGTGACGAGGAGATCCAAAACCACGTGGTGGAGGAGAATGGAGTTGGTGAGCAGGACGAAAGGACCCAGGCCATCAAACTGCTGAAAACAGTGTTGAAGTGGCTGATGGCCAGTGCGGGACGCTCGTTCTCCACTCCAGTCCCTCAGCAACTCCAGCTGCTGCCGCTGCTCTTTAAGATCGCGCCTGTTGAAAATGATGACAGCTATGATGAGCTGAAGAGAGACGCCAAGACATGTCTATCTCTTATGTCTCAGGGGCttctgtatcctgagcagatccCGATGGTACTCGCTGTGCTACATGAGATTGCCGGTAGCAGCTCTTGGCATGCCAGATACTCAGTGTTAACGTATCTCCAGACAATGGTGTTTTATAATCTGTTCACCATCCTGAGCAGCGAGCAGTGTGTTCAAGGCGTCAGAGCTCTGGTCATCAGGCTCCTGGAGGACGAGCAGCTGGAGGTGAGAGAAATGGCTGCCACCACACTTAGCGGCTTCCTGCAGTGCAATTTTTTGGCAATGGATTCCTCCATGCAGACCCACTTTGAGGCTCTATGCAAAACCAGATTGCCCAAAAAGAGGAAAAGAGATGTGGGTTCTGTGATGGACACCATTCCTTCTGTTGATCTAGTACGGCGTCACGCAGGAGTGCTGGGTCTCAGCGCTTGCATCTTATCCAGTCCGTATGATGTCCCAACCTGGATGCCTCAGCTCCTCATGGACCTCAGCGCACACCTCAATGACACGCAGCCCATTGAGATGACCGTGAAAAAGACTCTGTCTAATTTCCGCCGCACTCATCACGACAACTGGCTGGAGCACAAACAGCAGTTCACGGACGACCAGCTCGTGGTGCTCACAGACCTTCTGGTGTCTCCCTGCTACTATGCATAGACAGgttttgacagcgtttctgcaggttttagtttcctttttttattttatattcaaatcTTATGCATTCACGAGGACATGATGGAAGGACACAGACGCTCATGAAGTCGAACCCAAGAGCGCATGATCAGAAGAGGGCAGGAGGCAACAGAGATAGGCATGAAGATGTCGAGAACACAAGACCTGAGGCGAGCAATTTAACCACCTAGAAATACACTCTGTACGtactgtttgtatgtatatatctagcccatatttttgcatttttgaaacTATACTTAATATTTAAGGTTTACCAGTGCAGGGATGTACGGCCTGCAGTCTGTAATATTATTGTacagatagtttttttttttggtttttgggGGGAGGGGGTCCTCTCAAAACTGGGGTGTTGAATTGTGTGATGAAGGACAGATTGCCTAAGGATCGCCACATAAATCCAACTCAAAGCCCCCATCATGCTCTCTGATGTGAGTTTTTAATGTTCTGAGCACTCGACGATCGCTCAACGACTGAATCCATTAAATTTAGACTTTGTTGCATTTAACTGGAATATTTTCAGCGTGTAGCTTAACATTTTACATCTAGCAGCATGCGATtctcaatcaagtttttttttttgccataaaagcATTTTTGGATAGATCAAAATGTTTATTCATCGGATCGATAACTTGACGAACAATAAATTTGGGCTGAGTTCTCATTATTTATCATCACATGAGGACGCAAGTCTGAGTACTGTGACGTTAttgtggtatgtgtgtgtgtgtgaaaatagcTGTGACGTTGTCTTGTAGCTCCGCTCACATGCCATCATGACAGGGTTTTCTTTGTGTCCtctgtgtatttatatgtgtatgtatgcatttatgtacTGTACATATGCATTTATCTATGCATAAGCGACTGACATGTCTTCTCTTGAGAACTGCTTGAAGAGAATTAGAACGTAAAGCGAGTTTGTGGATGGCGGTGGATTCGTGCGCGTGATGGCGTGATTGTGCATGTTTGTagtttggatcctattttaagcCGTTTCTTATTGGCATGTGACAGAATCCAGGTTTGTCTTTCCCTATTCCATCCTCTGAATCCCTTTAGATTGAATCGCACACAGCGCCAGGGCAGGGCTTCGGGTCGTTATTATTACCATGGTTAGTTCTGTTTTACATTCGGGAGTGTACATAATAGGAACATTAGCTTAGTGCCAAAACTGCAGTGATTTCTCtctatttttttagatgtttgctttgttttactcTCAAGgccaataaatgtattgtttttaacaaattaaaaatgcaaggactcgttttttttctctctacaaTCTTGCTGTTTATCTGGAAAGTATAGTTTTATGAATGCATACAGTATGGTTGTGAATTCAACAAACATCGAGTTCACATAATGGACACAACAACAGATGAGTGGAGTTGTAATAGTTCTGACAAAGAATccataataaatgaatacaaagtCAAA

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0035093 spermatogenesis, exchange of chromosomal proteins biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:1990111 spermatoproteasome complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016504 peptidase activator activity molecular_function
GO:0070577 lysine-acetylated histone binding molecular_function
GO:0070628 proteasome binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100316-4 Predicted to enable lysine-acetylated histone binding activity; peptidase activator activity; and proteasome binding activity. Predicted to be involved in DNA repair; proteasomal ubiquitin-independent protein catabolic process; and spermatogenesis, exchange of chromosomal proteins. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of spermatoproteasome complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSME4 (proteasome activator subunit 4).

Ensembl:

ensembl_id ENSDART00000153136

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010737 lncRNA upstream 131844 23812530 ~ 23859432 (+) False XLOC_004717
TCONS_00010736 lncRNA upstream 212099 23778952 ~ 23779177 (+) True XLOC_004716
TCONS_00010935 lncRNA upstream 340220 23649892 ~ 23651056 (+) True XLOC_004713
TCONS_00010933 lncRNA upstream 385554 23589024 ~ 23605722 (+) False XLOC_004711
TCONS_00010738 lncRNA downstream 891093 24944172 ~ 24944504 (+) True XLOC_004726
TCONS_00009368 lncRNA downstream 1020226 25073305 ~ 25075120 (+) False XLOC_004728
TCONS_00010739 lncRNA downstream 1020439 25073518 ~ 25075120 (+) True XLOC_004728
TCONS_00009371 lncRNA downstream 1148464 25201543 ~ 25214727 (+) False XLOC_004731
TCONS_00010936 lncRNA downstream 1152452 25205531 ~ 25214727 (+) False XLOC_004731
TCONS_00009344 mRNA upstream 55943 23866368 ~ 23935333 (+) False XLOC_004717
TCONS_00009343 mRNA upstream 55943 23866368 ~ 23935333 (+) False XLOC_004717
TCONS_00009340 mRNA upstream 58700 23812530 ~ 23932576 (+) False XLOC_004717
TCONS_00009348 mRNA upstream 58700 23912074 ~ 23932576 (+) False XLOC_004717
TCONS_00009346 mRNA upstream 87138 23892972 ~ 23904138 (+) False XLOC_004717
TCONS_00009352 mRNA downstream 7815 24060894 ~ 24077141 (+) True XLOC_004720
TCONS_00009354 mRNA downstream 289224 24342303 ~ 24636681 (+) False XLOC_004722
TCONS_00009356 mRNA downstream 291532 24344611 ~ 24637303 (+) False XLOC_004722
TCONS_00009359 mRNA downstream 291884 24344963 ~ 24640339 (+) False XLOC_004722
TCONS_00009360 mRNA downstream 291884 24344963 ~ 24640339 (+) False XLOC_004722
TCONS_00009349 other upstream 59261 23923325 ~ 23932015 (+) True XLOC_004717
TCONS_00009347 other upstream 80327 23910832 ~ 23910949 (+) True XLOC_004718
TCONS_00009341 other upstream 124923 23838799 ~ 23866353 (+) False XLOC_004717
TCONS_00009336 other upstream 413885 23577266 ~ 23577391 (+) True XLOC_004712
TCONS_00009332 other upstream 880999 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009353 other downstream 161322 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009355 other downstream 289252 24342331 ~ 24345493 (+) False XLOC_004722
TCONS_00009361 other downstream 365145 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009364 other downstream 512399 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009372 other downstream 1170720 25223799 ~ 25251787 (+) False XLOC_004732

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_04633004_04663849.mRNA True 6297 mRNA 0.49 41 CI01000063 4632009 ~ 4664015 (+)