RNA id: TU14679


Basic Information

Item Value
RNA id TU14679
length 426
lncRNA type sense_over
GC content 0.62
exon number 1
gene id AMCG00016194
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11766152 ~ 11781547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGAGTGAGGTGGAGAAGCATGagggaaaggaggaggaggatttGTCAGAAAGGAGCAAACACACGGCCTCCGACTCTATACAGAGTAAAATATCCGAAGACACCGGCTTTGGCTCCCAGTCAGGAGAAGAGTGAAActtagaataaaatataaaccaaGCCTGCCATGTCAAGTCAATTGTATACATGAGTTGTACGTATCTCAGATTGCTCTGTATGCACAAGACAAGCTTACTGAAGGTATCTTATGCAGATGGGTGCTCTGCTCTTCTAGTTCTACGCTGCCTGATGCAACCTGTTTATCATagaatccttttttttcccacagctgggatttttttcccctctattAAACAACTTCAGTCTCGAAGGAATGACTCTCTTGGTTTATTGTACGACCGTCATGATTACAGGAAACAGCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14659 lncRNA downstream 27553 11738345 ~ 11738599 (-) True G11865
TU14652 lncRNA downstream 48735 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA downstream 48735 11711284 ~ 11717417 (-) True G11858
TU14598 lncRNA downstream 282359 11483562 ~ 11483793 (-) True G11814
TU14589 lncRNA downstream 365734 11400207 ~ 11400418 (-) True G11807
TU14772 lncRNA upstream 65851 11832428 ~ 11947322 (-) False AMCG00016203
TU14773 lncRNA upstream 124411 11890988 ~ 11907969 (-) False AMCG00016203
TU14816 lncRNA upstream 472208 12238785 ~ 12239014 (-) True G11996
TU14864 lncRNA upstream 586583 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 588098 12354675 ~ 12355364 (-) True G12046
AMCG00016195 mRNA downstream 36355 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016187 mRNA downstream 103317 11647731 ~ 11662835 (-) True AMCG00016187
AMCG00016188 mRNA downstream 143093 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016189 mRNA downstream 175055 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016183 mRNA downstream 290360 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016201 mRNA upstream 51511 11818088 ~ 11836421 (-) True AMCG00016201
AMCG00016199 mRNA upstream 81707 11848284 ~ 11866869 (-) True AMCG00016199
AMCG00016200 mRNA upstream 102210 11868787 ~ 11886193 (-) True AMCG00016200
AMCG00016203 mRNA upstream 124411 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016204 mRNA upstream 139499 11906076 ~ 11943652 (-) True AMCG00016204
TU14520 other downstream 918341 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 918341 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3571720 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7845728 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8226959 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 556584 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1095522 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1095522 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1103263 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1788008 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile