RNA id: AMCG00016196


Basic Information

Item Value
RNA id AMCG00016196
length 1416
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00016196
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11796688 ~ 11800796 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCCGTCTCTCAGACAGCCACCCTGAGCAGTATGCAGCAGCAGAGAGGAGCCAGCGCCGCCGCAGGGCCCGGGACCATGAGACTGGTTGTGACAGTAGCCCTGTGGGGCACACTCTGCCTCCTCCTGGTGGAATCAAGAACAGtGCGGCCTCCCAAGATAAAAGCACCAAAGCCTGGTTTAATCCAAGCAACCCCAGGAACGAGTCTGACGGTTTCATGCACGGCTGATCCGGGTTTCCCTGATGACTTCGTGGTCATCTACTGGCTGGTCAACAGCACTTTCATCGAGACCGCGTTCCCCAAAGGCCGGGTCAAGGAGGGGGAAGAGAAGACATACACCATCAACAATGAAGCCTTCATCCAACGGAACCTGACTTTTTCACCAACAcataataaggattttaaaaatatttttacttgtGTGGTCAATAACGCAGCTGGCCTTGCCAAGGTGGACATCAGACTGAgtaAGAAAAGCAGGAAAGGCAAGAAATCTGCAGGGCAATCcaggaaattgaaaataaatgacataatGAGAAGGAACATGATATAAGATAAATGTCTCAATTCATGCCAAACCTCTCCCTGGAAACTCAATGCAGTTGTTGTACAGAGCCCACAGTGCTGGATTTCTGAAGccactttaatatattttgaatgtatgttCAATTCTGAATACGAAAATGTTATAACAtctgaataaatattgtaaaagatAATACTATGAAGGCTGAGATGGATTTTGAACCCTTGGGAAAACAGAGACATTGTCACATGCAGAAGCCTAGTAAattgtcaaaatatatttttgccaaGGCTGTGAAGTGTTTATGATTTACATGTTAAACTTGGTTAATGGattaatttaacataaaacTGATTCTCACCAAGAATATtttcatgcaaaacacaaattctCTCTTTTGAATCAGCTACTGGTGTGTCAAGAGTTAAGCAGCAATGTTATGGTATAGCATTTGCAAATAGTTCcttattaacaaaaataacaagggggtgggggtgcacaAATTAAAAGGTGATTGATGGCCCATTTAATGTGGCATTTTATGAGATAGTTTATTCCACATCCGAAGCTTTAATTACTCTTGCTTCTCTACAATATGGAGTCAGCACTCTGATGGCaccattcatttgaattaaaaaatcaatAGGTCTCAAAGTGCAGTTTATTTCAGCTGGACAGTGAAAGATACAATGAGGAAAATTGAGAGATGGTAAAGTgatagaaaaacaacagatgtAGGAAATGCTAGCCTATTGCCTGCAATACCACAACTATCCACAAGAGGCTACCTGGTTAAAGACCATGAACACAAGCAAACCATCATTATTGGATAAGAAGGATATACTGTAGGTATACCATTTTGTGCAACAtgtttcacccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14644 lncRNA upstream 66462 11729600 ~ 11730226 (+) True G11851
TU14643 lncRNA upstream 69265 11726942 ~ 11727423 (+) True G11850
TU14642 lncRNA upstream 73087 11723197 ~ 11723601 (+) True G11849
TU14641 lncRNA upstream 74130 11722068 ~ 11722558 (+) True G11848
TU14640 lncRNA upstream 76280 11719779 ~ 11720408 (+) True G11847
TU14703 lncRNA downstream 16208 11817004 ~ 11819065 (+) True G11905
TU14713 lncRNA downstream 47489 11848285 ~ 11851621 (+) True G11914
TU14714 lncRNA downstream 47489 11848285 ~ 11851621 (+) False G11914
TU14762 lncRNA downstream 199672 12000468 ~ 12005903 (+) False AMCG00016202
TU14758 lncRNA downstream 227503 12028299 ~ 12029121 (+) False G11953
AMCG00016198 mRNA upstream 5056 11782180 ~ 11791632 (+) True AMCG00016198
AMCG00016191 mRNA upstream 32041 11751518 ~ 11764647 (+) True AMCG00016191
AMCG00016192 mRNA upstream 47317 11741483 ~ 11749371 (+) True AMCG00016192
AMCG00016193 mRNA upstream 55311 11733878 ~ 11741377 (+) True AMCG00016193
AMCG00016190 mRNA upstream 79648 11680800 ~ 11717040 (+) True AMCG00016190
AMCG00016197 mRNA downstream 36876 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016202 mRNA downstream 192176 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016205 mRNA downstream 255904 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016206 mRNA downstream 372272 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016207 mRNA downstream 440847 12241643 ~ 12261142 (+) True AMCG00016207
TU14432 other upstream 2197532 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2205039 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2570443 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2696652 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2724666 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 68029 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 977428 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1821083 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1830489 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1834646 13635442 ~ 13637001 (+) True G12351

Expression Profile