RNA id: AMCG00016197


Basic Information

Item Value
RNA id AMCG00016197
length 2849
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00016197
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11837672 ~ 11847864 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTCTGCACACACTGGATCAATGGGTGAGAGAGCGGCgggagggagtgggggtggTATCAGCCCTTGCAGTCCTACCGGCAGGAATCACAACGCTTATCGTCCCCTAGGTAAACAGCAGTGACCTTTCGCTACTCTTGTCATATTTGGACGAGCCCACGACCAACTTGGCATGAACTTTGCACACTTTCCTGCTGTCAGCAGAGTCAGGCTGCTCTGACAGGCGAGCAGCACTCTCCTGACACTCCGCTGCTCCCACTGCGAGAGAGGCAGTGCCGGCTGACTGCAGCATCAGGGATGGTGGGCAGGAAACGCAGAGGAGAAGGCAAGAATGGCCTGGCACAGCACTACACGAAGGAACCACGCAAGACGCTGAGGGAACCTGCTGCATTCGCAGGAGAAACCAGCTGTCAGTGCAGGGCTCCTCATGAGAAACTAACTGTATCTCAGGCTCGGCGCGGCACTCCAGTGGACCGGCCTGTGAGAGTGTATGCTGATGGGATCTTTGACCTGTTCCACTCAGGCCATGCTAGGGCTCTCATGCAGGCCAAGAACCTGTTTCCTAATGGATACCTGATAGTAGGAGTGTGCAGTGATGAGTTGACCCACAAGTACAAGGGCTTCACGGTGATGACGGAGGATGAGCGCTACGAGGCCCTGAGGCACTGCCGCTATGTGGACGAGGTCGTCCGAGACGCTCCCTGGACTCTCACTCCGGAGTTCCTGGAGAAGCACAAGATTGACTTTGTTGCTCATGACGATATTCCTTACTCTTCTGCGGGCTCAGAAGACGTCTACAAGCACATTAAGGAAGCAGGCATGTTTGTTCCAACGCAGAGAACCGAAGGCATCTCCACTTCGGATATCATTACCAGAATCGTGCGGGATTACGATGTATACGCCCGGCGCAACCTCCAGAGAGGCTACACAGCCAAGGAGCTGAACGAAAAGAAGTATCGCCTGCAGAATCAGGTggacaaaatgaaagaaaaagtcaaGAACGTGGAGGAAAAATCTAAGCACTTTGTGTATAAAGTCGAGGAGAAAAGCCATGATCTCATTCAGAAGTGGGAGGAAAAATCCAGAGAGTTTATTGGTAACTTTCTGGAGCTTTTCGGCCCCGATGGCGCTTGGaagcagatgttCCAGGAGAGGAGCGGGCGCATGCTACAGGCCCTCTCCCCACGCCAGTCCCCCACGGGCAGCCCCACCCGGGAGCTGTCGCCCTCACGCTCCCCCTCGCCCACCTACCGCTGGCCCTTCAACAAAACTTCCCCCCCGTCCTCCCCCAAAGCCGCCTCGGCCTCCATCAGCAGCATGAGCGAGGGGGACGAGGACGAGAAGTAGCCGGGGGGGCGCGCGCCGCTCACCCTCTCTGTTCCTCGTGACGCAGTACTGTACGcacttggggggggggaggggggcaccCTGGCATCCGCTCTCCTCTCCACACCGGCAGTCTCTGGATGAAGTCTCCTAGCCCTCCAGATAAGTGTGCTGTAGAGAAGAACGTGGATTATATGGGACGTTGAAAGAGATTCGTAGGTTCAGGAGTACTAGTAAagaaatgtcttttaaaatactCACATGTATACACTTCTGACTTGAAGCACTTCATgctgcatataaatgtaattattattattattattattattattattattatttcatgaaCCATGATAAAAGACCAagtgtaataatgtaattgatatacaataatttattaaatagtAATCCTCTATTGGTTGCTCAGACAAACATTGTTGAAAGgcaatatattttcacttaCATTGATTGCACCCATGAGTTAAGAATTGTTCATGGATTTTCATGAACTTGTCAACAATTCAGTTAAAGTTGAGAATAAGTAAAATGCAAATTCATAACAAAATAACTTAttcttacattattttcaagtaTGACATCTAAAAACTGTATCTCGTGATTCTCAGTAACATTAATTTCACGCACAGATTAACATCATGTTTCCAAAGGTCTAAAAAACGATCTTTAATCCCCCTGGGAATACACAGAGCAATCGTGTGTAAGCCAATCATGAACAACCAGGAAATTAACCAATCTGTGTCAGTGCAAAAACCCCTGTTGGGAATATAGTTTAGGTCACATTAGACAAGAGCTACTAAGAGGCGGGTATGTAATTAATTCTGTAAGGATgtgtaattgtgattttaattatttattaaaaatggaaagcCAGTTCCCACTCTAATGCACAAGCTGTTGGGAATAAAACTCTCACCAGTTCACATCTCATGCACCTCTTCATTTTATCTTGaagtaatttattaatacaatattaatacagtattgCAGGGGGGCATAACTCTGCAGGTTTAATACCTCTCCTTAAATGATCAACAGCTTTAGATTCAAGATCAGGGTTCAGTTGGTCAAATTGATCAAATAGTTCAGTTCATTAACGGCTGAAGCAGAATGCCCACTAGAGGGTCCAGGGCCCCTGAGGATGGAGTTGTGCAGCCCTGCATTACACCTTTACTAGGACTAGGAGGGGTTATGCAATTACTAGATTACTAGATGAGAGCCTactgacaaaaaaacagacataaaatCTATCGTTTTTCTGCCTAGGCCTTGACTCTGAAATTGCAGAGTGCAACAGCACGGTTTCTAGCAGGAGTCAATGTAACGAGCTCCTAAAGTGACAGACCATCATTGTTCTCAGAGACCACATGATTCAATATGCCTAAACTGCACTCTGTATGAAGTCAATGTACTGAATGTTCTGACagaaacatttagattttttttttatatacgtATAATTAAAGCTgcttaatatgtaaataaataaacctgtacAAAACAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14703 lncRNA upstream 18607 11817004 ~ 11819065 (+) True G11905
TU14644 lncRNA upstream 107446 11729600 ~ 11730226 (+) True G11851
TU14643 lncRNA upstream 110249 11726942 ~ 11727423 (+) True G11850
TU14642 lncRNA upstream 114071 11723197 ~ 11723601 (+) True G11849
TU14641 lncRNA upstream 115114 11722068 ~ 11722558 (+) True G11848
TU14713 lncRNA downstream 421 11848285 ~ 11851621 (+) True G11914
TU14714 lncRNA downstream 421 11848285 ~ 11851621 (+) False G11914
TU14762 lncRNA downstream 152604 12000468 ~ 12005903 (+) False AMCG00016202
TU14758 lncRNA downstream 180435 12028299 ~ 12029121 (+) False G11953
TU14759 lncRNA downstream 180435 12028299 ~ 12029121 (+) True G11953
AMCG00016196 mRNA upstream 36876 11796688 ~ 11800796 (+) True AMCG00016196
AMCG00016198 mRNA upstream 46040 11782180 ~ 11791632 (+) True AMCG00016198
AMCG00016191 mRNA upstream 73025 11751518 ~ 11764647 (+) True AMCG00016191
AMCG00016192 mRNA upstream 88301 11741483 ~ 11749371 (+) True AMCG00016192
AMCG00016193 mRNA upstream 96295 11733878 ~ 11741377 (+) True AMCG00016193
AMCG00016202 mRNA downstream 145108 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016205 mRNA downstream 208836 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016206 mRNA downstream 325204 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016207 mRNA downstream 393779 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016215 mRNA downstream 538114 12385978 ~ 12397053 (+) True AMCG00016215
TU14432 other upstream 2238516 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2246023 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2611427 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2737636 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2765650 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 20961 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 930360 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1774015 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1783421 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1787578 13635442 ~ 13637001 (+) True G12351

Expression Profile