RNA id: AMCG00016201


Basic Information

Item Value
RNA id AMCG00016201
length 7093
RNA type mRNA
GC content 0.51
exon number 24
gene id AMCG00016201
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11818088 ~ 11836421 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAAATGGAATCGAAACCAGATGTGGGCAGATGCTACGTGCTACGTCATCGACGCCGTGTACGTCATCAACAGTCTCAACCTGGATGACCCCGTCAACAAGCTGTCCAGCCTGCAGGATGGCAGCCTTTTAGTAAAGCTGATCTACAGGCTGCAACTGCAAGTGGTGGTTCTCCTCCTCTACTACTCCAACATGTGTGGCACGTATCAGGTATTTGAGAAGCTGAACTACAAGACGCAGGCTGAGCTGGCATCTGTCCTCCGATTTGTTCTCGATAATGAGGAGAGCCTTTACCTGAACAATAACTTGGAATCCTTCCTTAAGAGAAAagTGTCTCAAGTCACTCCAGTGTGTCAAGTTATTCCAGTGTCAGTGAGGAGGAATCCCCCATCatcaaaaggaaaaggaaacctGAAGTCCAGTTTCTGGACCTCCAGACTGTGGCGACAAGTTCTCTCTCCCATCCAAGATGTCCTGAAGACACCGCAGTTCCAGATGAGGAAACTTCGTAAACAGCTGTATCAGGAGAGGAATATGAGGGATGAGCTGGAAGTGGAGCTGGCAAACAGTTGCAAGATCATTACCGAGAGAGAGACCCAGCTGTCCCTCCTGCAGCAGAAAGTTCACAAGTTGATGAGGCACAATAATGAGCAAGACCAGGGACCCAATGAACTGGAGGAACTCGGCAACAAATATGAAAGTGTGGTGAAACGCTTGCAAGATGTCCGAAAACAGTGCCAGGACCTGAAAACCAACAAAGGTCAAATGGAGAGAAAGATTGACCAGTTGACAGAGGAGAATGGAAATCTTTCCTTCCAGATGAGAGATTTCCTAGTTCGTCTTACAGAAGCACAGGCTGCCGTGGACAAGCTGAGTGATGAGCAGGAACAGTCTGTGAAGGAGTGGGAGGCGAAACGCACACAGCTCGAGAGTGCTCTCAACCAGGCTATTGCAGACAAGGAGTGTTTTTCTGAACAGATTCTTATTCTTCAAGGGAAGATCTGTCAACTTGAAGATGAGCTGAAGAAAGAGCAGTCTCAGAGTAGGGTGGAAGGAGAGGTCATGGGAGATGTATTAGAGATGGAAGGCTTGAAGCAGGAGGTGGATGATCTTACTGTGAAGGTGTCTCAGCTTGAAGTTATCATAGCCAGCCTTGAGCAAGAGAAAGCACAAGCTCTAATGGACCTGAACTCTGAAAGAGCCAACTTTGAAAGTGAGAAGTCACATCTCACTGTGGTCATCGCTGGGCTGCAGCAGGCCCTGTCTGAGCTCGGGTGCGAGAAGGAAGAGCTGCAGCGAACTTCCAGGGAGCAGCAAGAGAGGCTGACAGCCCAGGTTTTAGCTCTGAATGCTGACATTGATAAACTGGCTGAGATTGTAAAACGCAGTGAGCTGGAAGTTGCAGGCCTGAGCCAGAAGGTGGAGGAAGAGCAGAGGCAGAATGGGCAGCTAGTCCAGCAAATGGAGAAGAAAGAGCAATCTGCTCTGGAGACTATTCATGGACTGAAGAAACAGGTGGATGATCTTGGCAGTGCCTTGAAAGTGAAAGAGGAGGAGGCCGTCTCTAGTACCCAGTTATGGGACATGGAGAGACAAGAGAGCGGCCGTAGGGAGATTGCCTTGCTGGAAGCGTCCAAGActgcagccagagagagagatgcagctTTGACTGAGTACCGCCATTTCCAAAaagacaaagaacaaaaaattgGGGAACTTGGCCAACAGATCCACACTCTAGAGGACCAATGGAAGGCCGAACAGAGTCTAGTCTCCAAGCTGAGAAATGAGAAGGGTGAGCTGGAGCAGAAGGTTGCAGCTTTGGAATTGGCCATCAATGAACTTCGCCTCAAATGTCAGAGCCTGGAGTCTAAGAGCGAAGCTCAAAGATGCAGCAATTTGGAGGCCATTGAAACCCTGACTGTGAGACTGCAAGACGCAGAGAAAGAGCTCCAGCACTATGAGGGGAAGTTAGTCCATCATTCTGGGGTAATTGAAGAGAATGGTAATCTGCGGAATCAGCTTGCTACTCTGGACGACACTGTGGGAAACCTGCGTGTTCAGATTGAGGCTGAGAGGAGAGGGTTCGAAGAGACTCGTTCTTTGGAGCTCCAGAGGGTCTGCCAATTGGGAGAGGAGGTCAAAGCATTGCAGGATAGGACCCAGCAAATGTCAACTGACTTAGAGTTTGCCCACCAGGAGCTGAAGAAAGAGCAACAAGAGAAACTGACTGCACAATCTTCTTTGGAAAAGCTGAGGGAGGAAAGTGGAGAGATGATAAAAGCTCTATCTGCAGAGCATGATCAAGCATCTTTAGCTATCAAGGCTAAAGAAGCTGAAATTAGGAAGCTGAGCTCTGAACTGGGATCTCTTGCAGACAAGTTGGCTTTAACAGAAGAAACCAAGGGCCAGGAGTTAGCTGCAAAGAAGGAGGAAATTACAAGGCTTATCCAAGAGATGGAGGGAACCCTAGAAAAACTGGAAATGGTCAACAAGGAAAAGGAAGACATGGAAAGTCGTCTTCAGTCCAGAATTGTGGAACACCAGGGACAGCTCTCGGCACTGCGTGAGGAGTTGGTTGATGTTCAGGGAACAGTGAGGCAAAAGGAAAGTGAACTCGAAGTGATTCTCAATCTGCAAAGGGAGACCTCTCAGCTGGAGGAGTTCCAAAAACGCTTGGCTAAAGAAGAGAAGGAAACTCAGTCTGTTGCTGCACTGGAGCAAGAGTTGGCAGAAGCTCGAAGACTGATGTCAGAGAAGGGCACTGCTTTTGAAAAGCAAGCAAACCAGCTGCTTGATCTTCAGAGGGAACTTTCACTTCAACAAGATACAACAGTCTCCTTGGAAAAACGCCTGGAGTCTTCGCAATCCAAGTGCAGTGAGCAGCAGATGCAGGTGGAGAAACTTTCCACAGAGCTGAAAGAGACCCGCTCCTCCAGTGGTCTTCGTGAGGCAGCCTTAAAACAGCAAGTAGATCGTTTACTGCAGGAGCTTGCGAGGCAAAACAGTGACCTGGAAACACTGAAGCAGGAAGTGTCAAACAGGAAGGAAGAGCAACTGGAGAGGGATGCCCTCAAGAAACgggcagctgctgcagcagaaGAACTGGAGAAGCTGCAGGCTGAATCTCTCATTGCAGCCTCCGTAGCGTCAGAAAAAGACATTGTGCTGCAGAATTTGCAAAAGGAAATCCAAGCTgtcaatgaaaaatatgaagagCTGCAAGAAAGGGATGTGGATAGAAGCAAGTTGGCGGACACCTGGGAATTAAATCTTCAACAGCACAATGAAACTGTACAGAGACTGCATGAGGAAGTCTCTGCTGCTTCCTCACTTGCCTCTGAAAGACAGCAGACAACTGAGACACTGGAGAAGGAACTTTCTTCCTTGCAACAAGAAGTGGAAATGCTGAGACACGGAAACCTTGTGACTTCAGCACTAGTCTCCGAGAAGGATTCCCAGCTCTCCTGTCTTCAGGAAGAAATCAAGAAACTGAAGGAGCAGGAAAATGCAAGAAATCTGGAAGCTGCCATGGAGAGAGCTCAGCAGAAAGAATTGCAAAGTACCATAGACAGGCTCCAGGCGGAAGTGCTAGCTGCTTCCAGAGCAGTTGCAGTAAAGGAATCTCAACGTAAGGAGCTGGAAGAATCAATTTCTGTTCTTAAGAAGGAGGTTGTCTCTGCTTCCTCCGAGAGAGAGCAGGCAGCTGGAATTTTCCAGACACAGCTTGCCTCCTTGCAGCAGGAGAACAAGCTCATGGCTACTGAAAAGGAGTCATTACAGCAGGAGCTGGTGCTGTTGAGAAAGACGGAAGCAGAGTTGTGTGACCTTCAACAGGAGCTGACCAACGCTCAGGCCCTAATTGGGGAGCTGATGCCAACTAAACGAAAGTGCCAGCAGCAGCAAGCTGAGCTGTGCCTGGCCCAGGCCAAACaccaggaggagctggagcagcgAGATCGAACAGCTGCCACCTTGGATAATGAGCTACAGCAGGCCAAAGATGAAATCTCTGTTCTCCGGCCACTGAAAGACCTAATCGCAGAACAAGAACTTTCCCTCCAAAAACTCCAGAAGGAGAACATGACCTACAGGGAGCAGGTGTGCAAGCTGCAGCAGGCCAACAGCCAGCTGACCAGTGAGAACCTGGAGATGTGCTCTGATGCAGAGGTGGCCATGAGGGAAGTGGTCCACACCCAGGAGCTGGAGAAGATCAAAGGAGAGCACCAGAGACAGATAGCCTCTCTGAAGGAGAAGGTCCGAGAAACTTGTGAGAAGTATAGAAGTATAGAAGAAGAGGACACCAAGCAGAAGGTTCTGGACGACAGGCAGAAGTTCcaggaggagagaaagaagcTCATTGTTCAGGTAGAGGAGCTGACCAAGAAGCTGGGACAGCAGGTGTGGGAGGCAGAGGTCAAAGAACTCAAGGAAAAGCTGACCCGCAGAGACGAGGTGCTGGAGCACTATAAGGCACAGGTGGAGAAAGCGAAGATCCACTATTCTGGCAAGAAGCAGCAACTGCAAGAATCCATCGAGAAGGTCCAGGCCCTGGAGACCGCACTGGAGGGGAGCCGGGGGGAAAGAGATGCTCTGAAGGCTGAGAGAAAGAGGATGGAGATGGAGCTGCACCAGGCCCAGCTGTCTGCAAAGAACCTGTCTACCAAAGTCAGCAGTCTGGAGGCCCAGgtggactTTGCAGACCGGCAGCTTAGGGAACACAAGAAGCTCCAGGGGAGTATTGACACCTTGAAGACCCAGAAGTCTGTGTGCCCCAGTGTCCCAGATAAATCACAGGACACCAGCAAGGACAGCTTGGAGCTTAGCCCGGATGAGGACGACACCCTCGTCTCTAAAAGgaagaggagagaagacAAGACTCCTGCAGCGAGGAGCTCCGAGAGGCTGGCGGCTCAGCGGCGTGCCCTCAGCCGGGAGTCCTTGGATACCCTGTACTTCACCCCCATGGCCCTCCGCTCCCAGACCAGACTGGAGAGCAGCATCACCTCCCTGGGGGACCTCACTCTCGACTCTGCCAAGAAGACCCAGTCTGCGCGCCGCCGTACCACACAGGTCATCAACATCACCCTGACTAAGAAGACTCCTGGAGCTCCAGAGCCCGAGAACGAGTCTTTCTTCAGCCTCCATGCGGCTCAGTCCCATCCCAACCTCTGCTCCCAGCGGGGAAGACCCCTGTCCATGGCCTCACTGTCCTCGCGGTACAGTGTCTCGCAGGAGTTGTTCAACGAGAGCTCAACCAGTGAACAGCTGCTCAACCTGCCTGGGTACCGCCCTGGCACTGCTAACACCTCGACCGCACACCGCAACACCAACACGTTTGTGGTCGGCTCTCAGAATGAACCGGAGCACACGGACGACTGGATGCGCCTTGCCGAGCTGCAGGCCAGGAACAAGACCTGTCTGCCCCATCTCAAGAGCAGCTACCCTCTGGAGGGCAGGCCCAGCATTGGAATCGCCTCGCTGTGCATCACGGATGATGAGGTACGCATGGGAAACCCCGACGACACCATCCGTCGGGCCTCCATGCTGCCCTCCCAGCTCCATGACACCCTGGCGCCCCACCGTATGTCCATGCAGCCCGGGCTGACTCGGGAAGGCATGCCCTCCCACCGGGCGACCATGCTGCCCAGCCAGATCAGGGAGACTGTGTCCTCTCATCGTGCCTCTTTGCTGCCCAAGCCCTCTGCCCAGCAGTCCTGGCAGACCACCTCGGGCACCTCCAAACAGGTCAAACGAACCACTGATGAGCCTCAGAACGGAGCGGACACTCCTGAGTCCAAGAAAGCATTGACCAGCTGCTTCCCACGGCCCATGACACCCAAAGACAAGAACGACCGTCGCTGGACCATGCAGAGCAGCCAGAACAAGCCGCCCGTGTGCCAGgATGAACGCCGCCAGTCCATGGCGTTCAGTATCACCAACACCCCCAAGAAGGCTGGCAGTCTCCTCCAGCGGGGCTTCAATAAGATGAGGGGCAGCACACGGAAGTCACCCACTTCCACAGGCAAAACGCCCCGAAAGTCCCCCCGCAGGTCTCCCCGGATCGGCAGCGGCAAGTCGCCCAAGAACACTGCAAGCGCCAAGAAGAGTATGATTAGAAAACCTCTGAAGAATATGAAGGTGTAAATCTACACTGTGGAGGAGGTGGAGATGTGGGCAAGTGAAGGCGGGCAGTTCCCTTCCTGACACCTCGTTCACCAGGCTCCAATTGCTACGTTTCTATCCTCTGACGCTCTTGAACCCAATCCTGCAGCTGCTTCAACAcctttatctgttttttttaatatcgtATTCAGCTAAATCAAATTAAGGATGCTGGGAAGGACATCCTAAAATCAGTGGCGTAATGTGCAATTAAACATTGGGGGGGTGTGGAGGCAGGAGTACCTGCTGTcccattcctcctcctccctccccttgtAAATATCTTTCCATtatcttttctatttttattcccCTTATTTAGTgcattttttcataaataaaatgttctgtgcattattttgtattgtcaaaTGACTGCCCCTGCTCTCTTGTGTGCAAATCAGCTGTTAAACAGACCCGGCTGAGAGAGCCCGTGTGGGAGCCGCCCGCTTTATAGGACGTCCTGCATCGGATCCAAAGTGCTCATATTGATATTTACACACTTCAGATTTTAAATGTCTGCCAGTGCATGgctgtggttttaattttacatgAGTTTTATGAGATTTTGCAGGTTTAAAACTTGTTTTGCTACAATTTTGTGAATTTTGACCGATTTAAGTGATCTCTACATCAAAGCTTTTTGATAGGAACTATACAATTCTTTTCACAAAGCATGGAGCCCATTAAAAATATGGGTGTCTGAGATCTGATCATGCAAAATGGACTGGAGGCAGAAACTGCATCAGTATCTGGAGAGGAGCAAACACTACTAATTGTGCTGAGAGGATCGAGGGTTTCTATTCCCTGGCCGCACCAGTACATTGGAGTTTAAAACCTAATTTGTCCTTTCATatccttttgtatttttctaagaAAGGCACACTGACTTTAGTGTtgcatcttttttctttttttttttttt

Function

GO: NA

KEGG:

id description
K16808 NUMA1; nuclear mitotic apparatus protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14679 lncRNA downstream 51511 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 79489 11738345 ~ 11738599 (-) True G11865
TU14652 lncRNA downstream 100671 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA downstream 100671 11711284 ~ 11717417 (-) True G11858
TU14598 lncRNA downstream 334295 11483562 ~ 11483793 (-) True G11814
TU14773 lncRNA upstream 54567 11890988 ~ 11907969 (-) False AMCG00016203
TU14816 lncRNA upstream 402364 12238785 ~ 12239014 (-) True G11996
TU14864 lncRNA upstream 516739 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 518254 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 551377 12387798 ~ 12391408 (-) True G12058
AMCG00016194 mRNA downstream 36541 11766442 ~ 11781547 (-) True AMCG00016194
AMCG00016195 mRNA downstream 88291 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016187 mRNA downstream 155253 11647731 ~ 11662835 (-) True AMCG00016187
AMCG00016188 mRNA downstream 195029 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016189 mRNA downstream 226991 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016199 mRNA upstream 11863 11848284 ~ 11866869 (-) True AMCG00016199
AMCG00016200 mRNA upstream 32366 11868787 ~ 11886193 (-) True AMCG00016200
AMCG00016203 mRNA upstream 54567 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016204 mRNA upstream 69655 11906076 ~ 11943652 (-) True AMCG00016204
AMCG00016208 mRNA upstream 371727 12208148 ~ 12236522 (-) True AMCG00016208
TU14520 other downstream 970277 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 970277 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3623656 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7897664 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8278895 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 486740 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1025678 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1025678 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1033419 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1718164 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile