RNA id: AMCG00016202


Basic Information

Item Value
RNA id AMCG00016202
length 2820
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00016202
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11992972 ~ 12005952 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGCCTGCGCACTGCGCGCTGCATGGGAGGCTCAGTGAAGAGCCCGGACCGGCGCAGGAGTGCAACATTTCACTGCGAGCTCTGCAGGAGGAACACCTGTTTCAATCCAGCCCAGCGACAagaagaaggggggaaaaaagaagaagaattaggaaaaaaagcacaagcaaaaGCAGCAACAGAGCACTCCTGCGTCTTCTCGTGTGCCGGTGGATCGCCTTACATTCACTGTACCTGGACACCTCTGCTCATCTCACCGCGCTTTCGGATATTACCTCCTGCACATCACAGAAGATCAAAGTTTTATTGCGGGATTTTGTCTGTGGCAACACTGTGCGATCTATAAAAACAACCTATAtgttatacatatacacatttgcTTCCAGCATTCATGCTGATGCATGCAGTCTATAATAGAGTAAAAACAGCGCATGCCTTTTTGGAGGCAGAATCCATAATTCTGACGTAGCCTGTACATCTTAAAATTCCCATAACGTCGGCTTTTTTTAAGTTGGCATGGTCATTCCTACCTTAACCCAAATGGAGAAGCTACGgatttttattcttaaaatagCTGGATGGGCTGAAGACCATATTACCTGTTAAGAGCTTGGGGATATAccgtatacatttaaattatgccCGTGTGTGAGTATAAAGTGGTGCTTTCTTAGACTAACAGTGCTTTGACCTTGAACCTGTACCAGTGCAAACAAAATCTTacttttatgtgtgtgtttcatggATTAATGGGAGACCAGCTTCATCAGTAACTGCAACAGGGAGGGAGTGGTATAAAGGTCTCTTGGGTTGAcaccattattattgttgtttattcgGGCTCTATAATAAAAGCAGAATCTCCTGATGGCTCCTTTAGGGGAAGTTGGGAACTATTTCGGTGCTCAGGATGCGAGTCCATTTGGGAATGTGCCGGTCCTGCCGGCGGATAACCCGGTTTTGTTAAGTGAGCACCTGGCCCAGGCGGAGGCTGGGGGTCTGCCAAAGGGGGCTGCAGTTACGGACTTGAACCATTTAAAGGGGATTCTCAGAAGGAGGCAGCTGTACTGCAGGACTGGATTTCACTTAGAGATTTTCCCCAATGGTACCATCCAGGGAACGAGGCAAGACCACAGTCGATTCGGTGCTGGGGATGTGGCGTGTCACCTTGTGCAATAGCGCACAACTTCAGCAGGGCACCGCTTTCAAGTGGCCCTCAATGGAGGTGCGCTGCGACAAGCACGTAACTGTCCAAGATCCCGGGCGGGCTGCCGCTGGTCTAAGGCGGTGTCGCATGCAGGCAGAGCGGGCAGATCTGCGGGAGCTGGCCGTGCGGCGGGTCGTGCCTGCTGGAGCAGGTATACTGGAGTTTATAAGCATAGCTGTGGGGTTCGTCAGCATTCGTGGAGTGGATAGTGGACTCTACCTCGGGATGAATGAGAAGGGGGAGCTGTATGGGTCGGACAAGCTGACACAGGAGTGTATATTCAAAGAGACGTTTGAGGAGAACTGGTACAACACCTACTCATCCAAGCTGTACACCCACACGGACACTGGACGGCCGTACTATGTGGCATTGAATAAAGACGGGACTCCAAGAGAAGGGACTAGGACTAAAAAGCATCAGagattaacacattttttaccAAGACCTGTGGACCCTGACAAAGTACCTGAGCTTTACAAGGATATTTTAAGCCAAAGTtgataaaaacatacttttttgtGTGGTTGAGCCcttaaaaagaggaaaaacaataccaactaaataaaaaatgataaaaaaactacaaaaaaacaaaaaacaaaaaacagaacagagacaaaacaaaaccactatAGAGATTTTGTGCGGTTGGTTCTTATTGATTAGCTGTGTCATCACGTCAGCTCCACTGTTGCCAAACTTTGTCGCATGCATAATGTATGATGGAGGCTTGGATGGATCATGCTGATTTTTGTTCTGCACTTAAAACAGTCTGTCCTGTTAGAGGAGAGCCAACCTCGCCCACTCGCTTGATTTGTTACAAGAGGCAACGCAAGACCAGAGAAGACACGGAAAGATACACCTGACCTggagagacagaaggagagagtgagagaaaatgagagaaaaggagagagagagagaaagagagatgtgGCCTGATGCATGCCAAGAGATGGACACGCTTTTAAGTTTTTGATCAGTTGAACTTCATCTTGTATCAGCATAGCTGCCATAACTTTTACTCATTGGGATTCTGGCTGGTGGCCTGCTCAAACCTATGCTGTATGAACAATGGCATGTAGGAtgcagtcttaaaaaaaaaaaaagcaaaaaaaaaaagcaagagacATTTTCTGTTAACACCCCAGTGGTGCTAGTCCATGGAGCTTAAAGCAAAGACCtcttagtaaaataaaaaaaaagaacgaaAAAGAAACCTTaaatttatttatagaaaactTTCAAAGgcaacattatatttattttatatatttatttattatatagagtttatttttaatgaaatatgtataGACCAACATAGGCGTTCTCGGAAAGCTTTAGAATCTGTAGGCATGTATTGGCGGAGGACACTAGGAGACTATGGACATTCATGCAAAAGACAGATATTCTAGTGACCCTTTATTGTTCTGAAGGTGACAATCTATTTTTTGCCcatattattgtaataatatgcACACCACTCATGACACACGAGTTTCCACTCTTCTGACTGCTTGTTTCATAGCTTTCCCCCTGAGGATTAAAGAAAAAGCTGGGTCtgatgatttgtattttgtgtcttttgtattttcttgtctACTGGTG

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14713 lncRNA upstream 141351 11848285 ~ 11851621 (+) True G11914
TU14714 lncRNA upstream 141351 11848285 ~ 11851621 (+) False G11914
TU14703 lncRNA upstream 173907 11817004 ~ 11819065 (+) True G11905
TU14644 lncRNA upstream 262746 11729600 ~ 11730226 (+) True G11851
TU14643 lncRNA upstream 265549 11726942 ~ 11727423 (+) True G11850
TU14758 lncRNA downstream 22347 12028299 ~ 12029121 (+) False G11953
TU14759 lncRNA downstream 22347 12028299 ~ 12029121 (+) True G11953
TU14808 lncRNA downstream 200396 12206348 ~ 12207474 (+) True G11988
TU14829 lncRNA downstream 256099 12262051 ~ 12265709 (+) True G12009
TU14854 lncRNA downstream 317225 12323177 ~ 12328393 (+) True G12032
AMCG00016197 mRNA upstream 145108 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016196 mRNA upstream 192176 11796688 ~ 11800796 (+) True AMCG00016196
AMCG00016198 mRNA upstream 201340 11782180 ~ 11791632 (+) True AMCG00016198
AMCG00016191 mRNA upstream 228325 11751518 ~ 11764647 (+) True AMCG00016191
AMCG00016192 mRNA upstream 243601 11741483 ~ 11749371 (+) True AMCG00016192
AMCG00016205 mRNA downstream 50748 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016206 mRNA downstream 167116 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016207 mRNA downstream 235691 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016215 mRNA downstream 380026 12385978 ~ 12397053 (+) True AMCG00016215
AMCG00016214 mRNA downstream 394877 12400829 ~ 12407292 (+) True AMCG00016214
TU14724 other upstream 121237 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 2393816 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2401323 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2766727 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2892936 9099420 ~ 9100036 (+) True G11509
TU14996 other downstream 772272 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1615927 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1625333 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1629490 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 2431819 14437771 ~ 14438606 (+) True G12587

Expression Profile