RNA id: TU14772


Basic Information

Item Value
RNA id TU14772
length 1950
lncRNA type read_through
GC content 0.54
exon number 3
gene id AMCG00016203
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11832428 ~ 11947322 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaatccatacctGTAAAGGAGCAACGCACACCCATCCAAGCGTGCTGCCATATTAGGTACCTTGAAATCAAAGTGTTTTAAGAACTGCAAttattctgaattaattaattacttgtgTTTAGCAATTGAGGGATCTGAAGGAAATGGATTCCGGGCCTGGCGATGTCACTACCTGCTGTTGTGAACTGTAGTCCAGTGTCATAACTTCTCTCTCCGTGAGTGAAACTACGTAACCGACTGAATTTACAGCAGCAGGACCGTGATCTTTGATGCAGGGTGATGTTATGTGAAGCTTGATCCCGTCCGTTCTAGGCTGTGCTTCTCCAAAGGGCTGAACCTAAAGGacagaatatgtatatttttatctAAGTTTGTGTTTACAGGCACTCTCCCACCACATTTATACTTGCTTCTCTACTACTATGTCTTCAGTGTCCATCACAAAAGCTTGAAACCATACATTACTGACCGCTAAAGACTCCTAACGCAAACGGGTTTGTGTATTATTCTGTGGCCGCCCCTTGCTTAGCAGATCTGGTTGTATAGTTCGGTACTTGTAAGGCCCTGTACTTTTAAAGCCCCTTAAAACTGAATGGATATCTTTGTTTCTATGGCAAGTCCTTTAgccatttattttgtgtcaaagaaaacaaaatgaggacaattgtttgtcatttttaaagctttttgagTAATGTCATGAACAAGggttcatttttgcatttaattgttttaattaggaGTTATAAAAGggaacaatacatttatttaaaacctgttttctttgctttgttaCAGAGTTTAATGTTCTTTAGTCCTCATGGTGTAGCTTCAAAACAAGTTGGCCAGCAAGCAAACCTGTGACCCTATTACCAAATGTACTGGGaccacacgcacacgcacaatGCCGCAGCTGCTTACAACATCCATgactgtggggggggggggggggggtggaatcCCTTTACCTCCAGATGGCCAGAGGAAAACTGAGACAATCCTCCCATGTCACCATTTATAACTTAGGAAAGGAAGCTGATCTCTGCCGTGTCTTCCTGGTATGCAATTCCAGTTCATCACAGAGGTATTCTGTTGGAGGGAGTTCAGCACCCTGATGTGGCCTAGTCATGCGTTTCTGTGACCCACTGCTCCGCTCTCAGTATTATAGTGTGGTGCATTTCCGTTTCGGTAGTCATGTCTGCTCGCTCGTCAGAAAATGCCATCAACGCTGTCAGTACAGTTGTGTAACATGTAGTGCCATGCGTGGTGCCCTTCCCAAGTGCAGCCCTGCATCCCAGACCTCTGTGCCAGTCTGTTAACAGTGGGTGGAGGCCTGTCCCATGACTTTTGGTATTCTGGTGTATTTAGAAGATTTGGCACTAGATTAGTCAGACCTTGTAAAGGTTTCCTGCTTCTGAGGCAAATGTAGCATGGCAAACCTCGCCAGCCTTTATACTCTGAAGCCTCGCAGTTGTTAATTTTTCCAGGTGAGGGTGGGTGTGGTTGCAgcttttgtacttttaaaaaccATCCACAAAGCCCTTATAGGAGACCCAAACCAATCCTTTTGTATCATTTACTTTGGTTTGTTCACAGATAGAGTAAGATCAAGTACAACTAAATTACCATCCAGTTTTAGAAACCATAgatcacttttgttttcttttgcattatATCCCAGTATTTGTAATACTAGCATGTCATTTGGGAGAGgaattgtatataatgtatatggtctgtattgtacattttatacagtcaATATAGAATAATGTCGCTTATGCTTTAAAGCATGaagcaaatcaaatgtatattgGCGATTTCAGATTTGTACTGTTATTCAAAGATAGCCATATTTGTTGTCCAGATCTCTGCACTCCTCTTTTGATAATTGTAACCTGATttgagggtgtttttttttttttttttttttttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14679 lncRNA downstream 65851 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 93829 11738345 ~ 11738599 (-) True G11865
TU14652 lncRNA downstream 115011 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA downstream 115011 11711284 ~ 11717417 (-) True G11858
TU14598 lncRNA downstream 348635 11483562 ~ 11483793 (-) True G11814
TU14816 lncRNA upstream 291463 12238785 ~ 12239014 (-) True G11996
TU14864 lncRNA upstream 405838 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 407353 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 440476 12387798 ~ 12391408 (-) True G12058
TU14937 lncRNA upstream 691171 12638493 ~ 12638698 (-) True G12096
AMCG00016194 mRNA downstream 50881 11766442 ~ 11781547 (-) True AMCG00016194
AMCG00016195 mRNA downstream 102631 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016187 mRNA downstream 169593 11647731 ~ 11662835 (-) True AMCG00016187
AMCG00016188 mRNA downstream 209369 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016189 mRNA downstream 241331 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016208 mRNA upstream 260826 12208148 ~ 12236522 (-) True AMCG00016208
AMCG00016210 mRNA upstream 316952 12264274 ~ 12296060 (-) True AMCG00016210
AMCG00016209 mRNA upstream 349531 12296853 ~ 12320656 (-) True AMCG00016209
AMCG00016211 mRNA upstream 377500 12324822 ~ 12328442 (-) False AMCG00016211
AMCG00016212 mRNA upstream 413253 12360575 ~ 12376528 (-) True AMCG00016212
TU14520 other downstream 984617 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 984617 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3637996 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7912004 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8293235 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 375839 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 914777 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 914777 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 922518 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1607263 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile