RNA id: AMCG00016206


Basic Information

Item Value
RNA id AMCG00016206
length 2944
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00016206
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12173068 ~ 12205659 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGATGGTACGGGAACAATACTCCTCAACGACACAAGGCACTAGCCTCCCACGCCCGGAGAATCAGTATGTCTACAAAATTGGGATCTATGGCTGGAGGAAGCGTTGTCTGTACCTCTTCGTTCTGCTCATGCTCATCATTTTGGTTGTGAACTTTGCACTGACTATCTGGATCCTGAGAGTCATGTGGTTCAACCCAgaaggAATGGGACTCCTAAGAGTAACGAAAGAAGGGCTTAGACTTGAAGGAGAGTCTGAATTTCTCTTTCCACTCTATGCCAAAGAGATTCACTCCAGAGAGGACTCGTCACTGCTTCTGCACTCCTCTCAAAATGTCACGGTCAACGCCCGGAATTCAGACGGGGACGTGACCGGCCGATTATCAGTAGGTCCGCAAATGGTTGAAGCCCAAGGACAAAGCTTTGAGATTAACTCCAACAGTGGCAAGATGTTGTTCTCTGCAAACGAACAGGAAGTGGTTGTTGGGGCCGACAAGCTCAGAGTGACAGgcCCTGAAGGCGCTCTCTTTGAACACTCTGTAGAAACACCTCTTGTCAAGGCTGAAGCTTTCAAGGACCTAAGGCTCGAGTCTCCCACCCGCTCCCTGAGTCTGGATGCTCCAAAAGGAGTCCACATCAAAGCTCTTGCAGGAAACATAGAGGCCACATCTCAGATGAATATAATGTTGCACACGAGTGAGGGGATGCTGATACTGGACGCCGAAACCGTGCGCCTGCCCAAGTTACCTCAAGGGACGAGAGGCGTGCCAGGGAACTCTCAGGGGCTGTACGAGGTGTGCGTGTGCCCGGACGGAAAACTGTACTTGTCTGTGGCAGGTGTTGGCTCCACTTGCCACGAATACAGCCGGGTCTGCCAGTGAGGCGGGCCGGGATCCCGGCACATTCTCTGGAGGCTTTTTCTGACTGGGAATATCCTTTTTTGTTCCTTCCACTTCTGATCTCTCTACACATGTATGCCCAAAGCATCTTTAAAAAGACTCGCTTTCAACGGAAATTCGTGACAAATGTTGAAGAATTCGCAACagccttttttaaattctttcCCCCAGACTGTTACTATACAAGCCTTCAAGAGAGACCCAAGAGCACAATTATACAGCTTTAAAGGAAACTGCCAGTAAACTAAGCAGCTTTGTCCATATTTGTATGGTTCCAGTGGCAAAacagctttcattttcattaaaaaatactcTGTATACATCATGGAAACAGTTGTATTCTTGACCATAACTAAACAATACTGCAGCTACATTTTTTTCAGATCTTTAACTGACTGTTACCAGCTGCAAGATAACTGTGCCAACCAACATGAAATCTTTTATTAACtctgtttttcctctctgtACACAGTGTCTATAGCTGGTCATGTTTAGCTGGTGACAGCTTCCTTTCTATGCAATCAGTTGATTTTGTCCGTGCAATAACAAACAGCGACtggatttcatttaaaagacCTTCCTTACGTGCATATTAGTGTCCtgtatttgtttgatgtttatttCAGGCAATTCCAAGGGTATATTGACCAGCTTTTTTAAGCAGGAATAAGGTACAATAAGACTAGTTTTATccatgtaatacattttttaaatatatttttaaattttaactaCACTTAAATTAAGCAGAATAAAACTGGTTTCTGTATTAAAGTGATTAGTGACATGTACATTAATATGACAATGCACAAAGCACTAGTCAAGTGGGgctaaaatgtaatgcattcaaTTCTACAATGATTGTCACGTACTGTAGCTTGAGATaggaagtgaaatgaaatggtTCAGACTTACTGGAAACACAGTAGGACTGGAACAACATATAGATTTGAATGGTGGCTCAGTTGATGCAAATCATTGACTCATTGAAAACTAACTATGTTTTCCACCTGAAATGCTAGTTTTGTTACACGTTTGTCACACTGTGCTTAAAACCACACTAACATGTCCAGCTCAAAATAACTGGTCTTCGTATAATATTGATTTTGCTATCATAGAACTTTAGATGATATTTATGTCAATATAATTGAGATATTACACAATTTGTATTGCACTCTTCATTTCTTTTCAAACAACCAACATACTTTGCTAGcatgactttttctttttccatttagtaaacattcacattaaaattgaaaaagtatTGGAAGCTTCATCTTGTTGGAATTGAGGTCTGGATTCCTAAAGCAGGTCCCCCCATATTGTCAACTGATAATAACAAGGATcatcaaataatgtaaatataatacgTTTCACATGAGTCAGAGTAATAACATAATTACAGAAGCACAGGGTCACAATGGTAGGGGTGCAAGATTTATATGTAACATCCCAGTAACCTGTATTACCTTTGCCCATAAAGATTACGCTCAATTCCAGCTGGTCGTAGATTCGGCTAGAgtagattaaaacattaaaataaagtacgTGTCTTGAGACTATTGACTTCTACAAGATATTTGTATGctagtttaaatttaaattaaaccttaattaaatacttttttttttttaaatcagtcgCTCAAGAGTGCCATAATGCTTTCTAACAaaaagatctctctctctctatatatatatatatatatattagttttgtgCCGTATAAATGTTTCGTTTTCATTTAAGGGGGGGAAGTATTTTTGTGCAGAGTATACGTGTTCCCTTTGTATATCGTCACAATCACTCAAACGGCCAGGAGAAACCTTGTTGATGATGAAGGGTGAGGACTCTTATACATCTAATTGAATAgccaatgttaaaaataatacacaaaactaTTTACTAATATTATATTCAAAGACCCAGAGGTCAGAAATGTTCTCTGAATTGTTATTTGAGGAACACTGTACAAACGTTGGGGCAATTTTATGAAATTTCATGAATTTATCAATCTACCTTTGTATGTCTGAATAAAGGGGT

Function

GO: NA

KEGG:

id description
K12564 SGCG; gamma-sarcoglycan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14758 lncRNA upstream 143947 12028299 ~ 12029121 (+) False G11953
TU14759 lncRNA upstream 143947 12028299 ~ 12029121 (+) True G11953
TU14762 lncRNA upstream 167165 12000468 ~ 12005903 (+) False AMCG00016202
TU14713 lncRNA upstream 321447 11848285 ~ 11851621 (+) True G11914
TU14808 lncRNA downstream 689 12206348 ~ 12207474 (+) True G11988
TU14829 lncRNA downstream 56392 12262051 ~ 12265709 (+) True G12009
TU14854 lncRNA downstream 117518 12323177 ~ 12328393 (+) True G12032
TU14855 lncRNA downstream 117518 12323177 ~ 12328393 (+) False G12032
TU14859 lncRNA downstream 126477 12332136 ~ 12333112 (+) True G12036
AMCG00016205 mRNA upstream 63684 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016202 mRNA upstream 167116 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016197 mRNA upstream 325204 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016196 mRNA upstream 372272 11796688 ~ 11800796 (+) True AMCG00016196
AMCG00016198 mRNA upstream 381436 11782180 ~ 11791632 (+) True AMCG00016198
AMCG00016207 mRNA downstream 35984 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016215 mRNA downstream 180319 12385978 ~ 12397053 (+) True AMCG00016215
AMCG00016214 mRNA downstream 195170 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016213 mRNA downstream 236273 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016218 mRNA downstream 460524 12666183 ~ 12679044 (+) True AMCG00016218
TU14724 other upstream 301333 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 2573912 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2581419 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2946823 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 3073032 9099420 ~ 9100036 (+) True G11509
TU14996 other downstream 572565 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1416220 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1425626 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1429783 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 2232112 14437771 ~ 14438606 (+) True G12587

Expression Profile