RNA id: AMCG00016207


Basic Information

Item Value
RNA id AMCG00016207
length 2653
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00016207
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12241643 ~ 12261142 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCTGCGGCTGCGGAGATGAAAGGCAGCCCTGCGCGCCGGCTGGGCTTCACACCGCGGAGCAGCAGCGCACAGCCCGCCTCTCAGCCCAGCCCTCGCCAGGCCGGACACTCCGGGGGCGGTGGAAGCAGAAGTGTTTCTCCCGGGAAGAAGGGCGAAGGGAAGCAGAGCTCGTCCTCGCATCCTCCGGGCCGGATCCCGCTCGGACGTGCCGGCGGTCGCGACTCGTACGCCGGGCTCGTCtgctggCGGTTTTGCTGCTGGTCGGCCTTTGATGTGCGTCGCCGATCACCGATCAGATTACAAGGCTTGGATCCCAGCCCTCCTCTTGCCTTTGATCTCCgggcacatttgttttctcgCTCTCTGCCTTTGCGCAATTTCGGAGGCTCGTCTGGAGTTGCGCAGCTGGGAGTGATGTTTTTTGCACAAGCAGAAGAGCTTGTTGAGTGCAGGGAGCAGGAGTACAGGGATGCGTCTGGGAAGTGCATTCCCTGTAAACAGTGTGATGCGGGTCAAGAGCTGTCTAAGGAATGCGGTTTTGGCTATGGGGAGGATGCCCGGTGTTTGCCATGCAGGGTGAATCGGTTCAAAGAGGACCGAGGGCTTCAGAAGTGCAAGCCCTGCCTGGACTGCGCCCTCGTCAACCGCTTCCAGAAAGGCAACTGCAGCATGACCAGCAACGCCGTGTGTGGAGACTGCCTGCCAGGGTTTTACAGGAAGACCAAGTTGAGTGGCTTCCAAGATATGGAGTGTATACCATGCGGAGACCCACCACCTCCGTATGAACCTCACTGCAGCACACGGGTGAACCTGGTCCGCATCCCTTCAACCGTGTCCAGTCCCCGCGACACCGCGCTGGCCGCCGTCATCTGCAGCGCGCTGGCAACGGTGCTGCTGGCCCTTCTCATCCTCTGGACCACGAGATCTCAGGAGGGACCTTTCAATGGTGCCGAGCTTTCCCACTTTGACCGCCAGCGGATCGGCGAGTTCTCTCACCGAACCTGCTGCCACTGCCACCGAGATCCGGCGCAGACATGCGGTCCCGTTCACCTGATCCCGTCTCTGTGCTGTGACGAGATGTGCAGTCTGGGCCGCAGTAGTGACGGTTGCCCTTTCCACTCTCGAAACACCCTCGATGAAGGCATGGCGGATTCTGTGGACGGCCATATCCCCGCATTCCTGGCAGCGTTTCCCGATTCTTCTCCCGGAGATTCCACAGAGGTTTGGCCACTGATGCGAAACTCGGCCTGCAGTGAAAGCCTCAACTTGTCCCAGTCCGTGCTGAAGGAGAGAGGAACGCCCAGCTCGGAGAGGAGCTCGGGGACCCTGGAGGCCGCATTGGCAACCGAATCGGAAGCCCCCGCTCAGCAGGCCCTGTCTGAGACCCTGCGGTCTCTGTGTGACACGGCCAAGGAGACCAGTCGAGAAGCCAGTGAAGACATCGGTGGCACTCCCTGCAACCCTATCTCCGAATCTCCGCAGCTGCAGCCATGTCCATTTCAAGgcTGACATGCATTTGGATTTTCTGAGGCTAATTTTATATGAAGAGACATGGATAGGAGAACACAGTGGGACCCAGTTTAAGTTTGGATCGCCACACAAAACACTTCCTGAAAAGAGTTTGGCgcccatctttttttttttttaacaagctgCGTATCACCTGCGGCCTTCCTGAAAGCATCTGAAGGGACTATTATAAATACgtgcaaacaaatgcttttcacGGCAAAGCACAAGAACAATGACTCGAGCCCAGAGGAGGGATGGGGAGTTAAGGTGAGGGACTGGCCCAAGTACAGtatttaatgaagctgaaaAGAGACTGTTTGCAGTTCGTCAGGGTGCAAACCCTATTAAGTCAACAAGAGAATGCTGTTCTATATTTGATGTTCCAGAAGGAGAATGTGCCACACTTTTCCCAAGTGACTTATTAGCCAGAAAAGCAATATATTATAAGTCTGAGTTCACtatacatcaatatatataaCTGTTTACCAATCTCACACTCTGGTTCAACATTAACAGACTCAcagatctttttcttttttttcattgattttccATCTTCCTGTGGACTGCTGAATGTGCTTTTATGTGGCTATGCACTATGTTTaaggagaataaataaaaataactgggGCAGTAGTGGTTAGAGCTCTGGgctgtgggttcaatcccaggtgggggataCCTAGATTGCACCAGTATAATAAAATGGGTATCTGTGTCAAATAagaatgtgatgtattgtaacaattataagtcaccctgaataagggctGCAAAGAAATATCATAACTCTTGAGAAgaccaaaataataatcaccataATAATCCATTCACATAAATCTTATGCACTTTGAAGCAGACATGATAAAACCATAATGGAAGAGAGAGGACAGTTTGTGAATGTTTGCAGATGGGACACTCTTATTAGGTGCAACTGTGTTACTGTAGATATTGTAATATAGACAATAGaatgtgaatatttttttaatgcggGCGACTACCCAGTTCAGACCGTAGTTCATCCTGCCAGCTCAGTAGTGATGTTTTTTGACGTGTACAGTGTATACTTTTTCAAATCAACCTAAATGCCTTTTGCaacctttttgtatttgtaaataaatccTGCAAACCATGA

Function

GO: NA

KEGG:

id description
K05155 TNFRSF19, TROY; tumor necrosis factor receptor superfamily member 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14808 lncRNA upstream 34169 12206348 ~ 12207474 (+) True G11988
TU14758 lncRNA upstream 212522 12028299 ~ 12029121 (+) False G11953
TU14759 lncRNA upstream 212522 12028299 ~ 12029121 (+) True G11953
TU14762 lncRNA upstream 235740 12000468 ~ 12005903 (+) False AMCG00016202
TU14713 lncRNA upstream 390022 11848285 ~ 11851621 (+) True G11914
TU14829 lncRNA downstream 909 12262051 ~ 12265709 (+) True G12009
TU14854 lncRNA downstream 62035 12323177 ~ 12328393 (+) True G12032
TU14855 lncRNA downstream 62035 12323177 ~ 12328393 (+) False G12032
TU14859 lncRNA downstream 70994 12332136 ~ 12333112 (+) True G12036
TU14865 lncRNA downstream 93533 12354675 ~ 12355369 (+) True G12042
AMCG00016206 mRNA upstream 35984 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016205 mRNA upstream 132259 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016202 mRNA upstream 235691 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016197 mRNA upstream 393779 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016196 mRNA upstream 440847 11796688 ~ 11800796 (+) True AMCG00016196
AMCG00016215 mRNA downstream 124836 12385978 ~ 12397053 (+) True AMCG00016215
AMCG00016214 mRNA downstream 139687 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016213 mRNA downstream 180790 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016218 mRNA downstream 405041 12666183 ~ 12679044 (+) True AMCG00016218
AMCG00016220 mRNA downstream 421130 12682272 ~ 12691799 (+) True AMCG00016220
TU14724 other upstream 369908 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 2642487 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2649994 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3015398 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 3141607 9099420 ~ 9100036 (+) True G11509
TU14996 other downstream 517082 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1360737 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1370143 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1374300 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 2176629 14437771 ~ 14438606 (+) True G12587

Expression Profile